DS005403: eeg dataset, 32 subjects#
Delayed Auditory Feedback EEG/EGG
Citation: Veillette, J., Rosen, J., Margoliash, D., Nusbaum, H. (2019). Delayed Auditory Feedback EEG/EGG. 10.18112/openneuro.ds005403.v1.0.1
32-participant EEG dataset — Delayed Auditory Feedback EEG/EGG.
Quickstart#
Install
pip install eegdash
Access the data
from eegdash.dataset import DS005403
dataset = DS005403(cache_dir="./data")
# Get the raw object of the first recording
raw = dataset.datasets[0].raw
print(raw.info)
Filter by subject
dataset = DS005403(cache_dir="./data", subject="01")
Advanced query
dataset = DS005403(
cache_dir="./data",
query={"subject": {"$in": ["01", "02"]}},
)
Iterate recordings
for rec in dataset:
print(rec.subject, rec.raw.info['sfreq'])
If you use this dataset in your research, please cite the original authors.
BibTeX
@dataset{ds005403,
title = {Delayed Auditory Feedback EEG/EGG},
author = {Veillette, J. and Rosen, J. and Margoliash, D. and Nusbaum, H.},
doi = {10.18112/openneuro.ds005403.v1.0.1},
url = {https://doi.org/10.18112/openneuro.ds005403.v1.0.1},
}
About This Dataset#
Electroglottography (EGG) and audio are included in the EEG files themselves, rather than in sidecar files, as they were converted from analog to digital on the same hardware. The audio is the audio the subject heard, i.e. their delayed auditory feedback. If you want the speech waveform aligned to the time the subject produced it, you can shift the audio back by the timestamps recorded (for each trial) in the delay field of the events sidecar file.
EGG has already been minimally preprocessed to correct for phase delays induced by the built-in hardware filter of the EGG amplifier by applying an equivalent software filter in the opposite temporal direction. (This is the same strategy employed by “zero phase shift” filters in MATLAB and scipy.) Data was organized according the the BIDS standard for EEG data using the MNE-BIDS software (Appelhoff et al., 2019; Pernet et al., 2019).
Appelhoff, S., Sanderson, M., Brooks, T., Vliet, M., Quentin, R., Holdgraf, C., Chaumon, M., Mikulan, E., Tavabi, K., Höchenberger, R., Welke, D., Brunner, C., Rockhill, A., Larson, E., Gramfort, A. and Jas, M. (2019). MNE-BIDS: Organizing electrophysiological data into the BIDS format and facilitating their analysis. Journal of Open Source Software 4: (1896). https://doi.org/10.21105/joss.01896
Pernet, C. R., Appelhoff, S., Gorgolewski, K. J., Flandin, G., Phillips, C., Delorme, A., Oostenveld, R. (2019). EEG-BIDS, an extension to the brain imaging data structure for electroencephalography. Scientific Data, 6, 103. https://doi.org/10.1038/s41597-019-0104-8
Notes
Cohort#
Dataset Statistics#
Sex composition
Channel counts: 66 ch (n=32 recordings)
Sampling frequencies: 10000.0 Hz (n=32 recordings)
Total recording duration: 13 h 22 min
Signal · Electrodes & live trace#
Live trace viewer — sub-13 · task-daf
Showing one representative recording out of
32 subjects and 32 recordings in this dataset.
Browse the full set on OpenNeuro;
drop any other _eeg.{set,edf,bdf,vhdr} file onto the
viewer (or pass ?eeg=<url>) to inspect it.
Electrode layout — EEG · 62 sensors — 62 channels
NEMAR Processing Statistics#
The plots below are generated by NEMAR’s automated EEG pipeline. The histogram shows pipeline success for data cleaning and ICA decomposition, the percentage of data frames and EEG channels retained after artefact removal, line noise per channel (RMS, dB), and the age/gender distribution of participants.
HED event descriptors word cloud
Manifest#
File Explorer#
Browse the BIDS file structure of this dataset. Records are fetched on demand from the EEGDash catalog the first time you open the explorer.
Full dataset metadata table
Dataset ID |
|
Title |
Delayed Auditory Feedback EEG/EGG |
Author (year) |
|
Canonical |
— |
Importable as |
|
Year |
2019 |
Authors |
Veillette, J., Rosen, J., Margoliash, D., Nusbaum, H. |
License |
CC0 |
Citation / DOI |
|
Source links |
OpenNeuro | NeMAR | Source URL |
Copy-paste BibTeX
@dataset{ds005403,
title = {Delayed Auditory Feedback EEG/EGG},
author = {Veillette, J. and Rosen, J. and Margoliash, D. and Nusbaum, H.},
doi = {10.18112/openneuro.ds005403.v1.0.1},
url = {https://doi.org/10.18112/openneuro.ds005403.v1.0.1},
}
API Reference#
eegdash.datasetEEGDashDatasetDS005403 · Veillette2024eegdash/dataset/registry.py · [source ↗]- class eegdash.dataset.DS005403(cache_dir: str, query: dict | None = None, s3_bucket: str | None = None, **kwargs)[source]#
Delayed Auditory Feedback EEG/EGG
- Study:
ds005403(OpenNeuro)- Author (year):
Veillette2024- Canonical:
—
Also importable as:
DS005403,Veillette2024.Modality:
eeg; Experiment type:Motor; Subject type:Healthy. Subjects: 32; recordings: 32; tasks: 1.- Parameters:
cache_dir (str | Path) – Directory where data are cached locally.
query (dict | None) – Additional MongoDB-style filters to AND with the dataset selection. Must not contain the key
dataset.s3_bucket (str | None) – Base S3 bucket used to locate the data.
**kwargs (dict) – Additional keyword arguments forwarded to
EEGDashDataset.
- data_dir#
Local dataset cache directory (
cache_dir / dataset_id).- Type:
Path
Notes
Each item is a recording; recording-level metadata are available via
dataset.description.querysupports MongoDB-style filters on fields inALLOWED_QUERY_FIELDSand is combined with the dataset filter. Dataset-specific caveats are not provided in the summary metadata.References
OpenNeuro dataset: https://openneuro.org/datasets/ds005403 NeMAR dataset: https://nemar.org/dataexplorer/detail?dataset_id=ds005403 DOI: https://doi.org/10.18112/openneuro.ds005403.v1.0.1 NEMAR citation count: 1
Examples
>>> from eegdash.dataset import DS005403 >>> dataset = DS005403(cache_dir="./data") >>> recording = dataset[0] >>> raw = recording.load()
- __init__(cache_dir: str, query: dict | None = None, s3_bucket: str | None = None, **kwargs)[source]#
- save(path: str, overwrite: bool = False, offset: int = 0)[source]#
Save datasets to files by creating one subdirectory for each dataset:
path/ 0/ 0-raw.fif | 0-epo.fif description.json raw_preproc_kwargs.json (if raws were preprocessed) window_kwargs.json (if this is a windowed dataset) window_preproc_kwargs.json (if windows were preprocessed) target_name.json (if target_name is not None and dataset is raw) 1/ 1-raw.fif | 1-epo.fif description.json raw_preproc_kwargs.json (if raws were preprocessed) window_kwargs.json (if this is a windowed dataset) window_preproc_kwargs.json (if windows were preprocessed) target_name.json (if target_name is not None and dataset is raw)
- Parameters:
path (str) –
- Directory in which subdirectories are created to store
-raw.fif | -epo.fif and .json files to.
overwrite (bool) – Whether to delete old subdirectories that will be saved to in this call.
offset (int) – If provided, the integer is added to the id of the dataset in the concat. This is useful in the setting of very large datasets, where one dataset has to be processed and saved at a time to account for its original position.
BaseDataset from braindecode — windowed via create_windows_from_events.braindecodeDataLoader; supports parallel workers and on-the-fly augmentations.pytorchdatasets.load_dataset("EEGDash/ds005403").huggingface
Find datasets with the EEGDash APIQuery the catalogue, filter by task or modality, list candidates.
Load one EEG recordingResolve a single record to an MNE Raw with channels and events.
EEG recording to PyTorch DataLoaderWrap braindecode windows in a DataLoader for model training.
Preprocess EEG and create windowsFilter, resample, epoch — and persist the windowed dataset.
Save and reload prepared dataCache a windowed dataset to disk and reattach it without recompute.
Download a dataset locallyPrefetch BIDS files to a local cache and validate the layout.Swap any load_dataset(...) call for ds005403 to reproduce the tutorial on this dataset.
Citation
Veillette, J., Rosen, J., Margoliash, D., Nusbaum, H. (2019). Delayed Auditory Feedback EEG/EGG. 10.18112/openneuro.ds005403.v1.0.1
Provenance
¹Contributed to openneuro in BIDS format.
²Curated & ingested by the EEGDash catalog; see CITATION.cff for canonical reference.
³Persistent identifier: 10.18112/openneuro.ds005403.v1.0.1.
See Also#
eegdash.dataset.EEGDashDataseteegdash.dataset