DS004771: eeg dataset, 61 subjects#
EEG/ERP data from a Python Reading Task
Citation: Chu-Hsuan Kuo, Chantel S. Prat (—). EEG/ERP data from a Python Reading Task. 10.18112/openneuro.ds004771.v1.0.0
61-participant EEG dataset — EEG/ERP data from a Python Reading Task.
Quickstart#
Install
pip install eegdash
Access the data
from eegdash.dataset import DS004771
dataset = DS004771(cache_dir="./data")
# Get the raw object of the first recording
raw = dataset.datasets[0].raw
print(raw.info)
Filter by subject
dataset = DS004771(cache_dir="./data", subject="01")
Advanced query
dataset = DS004771(
cache_dir="./data",
query={"subject": {"$in": ["01", "02"]}},
)
Iterate recordings
for rec in dataset:
print(rec.subject, rec.raw.info['sfreq'])
If you use this dataset in your research, please cite the original authors.
BibTeX
@dataset{ds004771,
title = {EEG/ERP data from a Python Reading Task},
author = {Chu-Hsuan Kuo and Chantel S. Prat},
doi = {10.18112/openneuro.ds004771.v1.0.0},
url = {https://doi.org/10.18112/openneuro.ds004771.v1.0.0},
}
About This Dataset#
EEG data for the Python reading task (acceptability judgments) described in [Kuo, C-H. and Prat, C.S. Programmers show distinct, language-like brain responses to violations in form and meaning when reading code], pending submission to Nature Communications.
This study recruited 62 total subjects. 1 subject did not complete the EEG session and was removed from all analyses and is not included in this dataset. The remaining 61 individuals’ EEG data are included. The participants info file contains information regarding which individuals were included in the final analyses (per artifact rejection criteria detailed in the article).
The stimuli for this study was administered in Presentation; as such, the files are in the formats compatible with this program.
The provided code was used for processing the EEG data. All statistics were run in Jamovi, an R-based open source software; feel free to reach out for the original files if you are interested.
Cohort#
Dataset Statistics#
Age distribution by gender (n=61, range 18–33 yr, mean 22.5 yr)
Sex composition
Channel counts: 34 ch (n=61 recordings)
Sampling frequencies: 256.0 Hz (n=61 recordings)
Total recording duration: 10 h 35 min
Signal · Electrodes & live trace#
Live trace viewer — sub-021 · task-PY
Showing one representative recording out of
61 subjects and 61 recordings in this dataset.
Browse the full set on OpenNeuro;
drop any other _eeg.{set,edf,bdf,vhdr} file onto the
viewer (or pass ?eeg=<url>) to inspect it.
No scalp electrode layout is currently indexed for this dataset. Once the eegdash montage registry ingests it, the interactive viewer will appear here automatically.
NEMAR Processing Statistics#
The plots below are generated by NEMAR’s automated EEG pipeline. The histogram shows pipeline success for data cleaning and ICA decomposition, the percentage of data frames and EEG channels retained after artefact removal, line noise per channel (RMS, dB), and the age/gender distribution of participants.
HED event descriptors word cloud
Manifest#
File Explorer#
Browse the BIDS file structure of this dataset. Records are fetched on demand from the EEGDash catalog the first time you open the explorer.
Full dataset metadata table
Dataset ID |
|
Title |
EEG/ERP data from a Python Reading Task |
Author (year) |
|
Canonical |
— |
Importable as |
|
Year |
— |
Authors |
Chu-Hsuan Kuo, Chantel S. Prat |
License |
CC0 |
Citation / DOI |
|
Source links |
OpenNeuro | NeMAR | Source URL |
Copy-paste BibTeX
@dataset{ds004771,
title = {EEG/ERP data from a Python Reading Task},
author = {Chu-Hsuan Kuo and Chantel S. Prat},
doi = {10.18112/openneuro.ds004771.v1.0.0},
url = {https://doi.org/10.18112/openneuro.ds004771.v1.0.0},
}
API Reference#
eegdash.datasetEEGDashDatasetDS004771 · Kuo2023eegdash/dataset/registry.py · [source ↗]- class eegdash.dataset.DS004771(cache_dir: str, query: dict | None = None, s3_bucket: str | None = None, **kwargs)[source]#
EEG/ERP data from a Python Reading Task
- Study:
ds004771(OpenNeuro)- Author (year):
Kuo2023- Canonical:
—
Also importable as:
DS004771,Kuo2023.Modality:
eeg. Subjects: 61; recordings: 61; tasks: 1.- Parameters:
cache_dir (str | Path) – Directory where data are cached locally.
query (dict | None) – Additional MongoDB-style filters to AND with the dataset selection. Must not contain the key
dataset.s3_bucket (str | None) – Base S3 bucket used to locate the data.
**kwargs (dict) – Additional keyword arguments forwarded to
EEGDashDataset.
- data_dir#
Local dataset cache directory (
cache_dir / dataset_id).- Type:
Path
Notes
Each item is a recording; recording-level metadata are available via
dataset.description.querysupports MongoDB-style filters on fields inALLOWED_QUERY_FIELDSand is combined with the dataset filter. Dataset-specific caveats are not provided in the summary metadata.References
OpenNeuro dataset: https://openneuro.org/datasets/ds004771 NeMAR dataset: https://nemar.org/dataexplorer/detail?dataset_id=ds004771 DOI: https://doi.org/10.18112/openneuro.ds004771.v1.0.0 NEMAR citation count: 1
Examples
>>> from eegdash.dataset import DS004771 >>> dataset = DS004771(cache_dir="./data") >>> recording = dataset[0] >>> raw = recording.load()
- __init__(cache_dir: str, query: dict | None = None, s3_bucket: str | None = None, **kwargs)[source]#
- save(path: str, overwrite: bool = False, offset: int = 0)[source]#
Save datasets to files by creating one subdirectory for each dataset:
path/ 0/ 0-raw.fif | 0-epo.fif description.json raw_preproc_kwargs.json (if raws were preprocessed) window_kwargs.json (if this is a windowed dataset) window_preproc_kwargs.json (if windows were preprocessed) target_name.json (if target_name is not None and dataset is raw) 1/ 1-raw.fif | 1-epo.fif description.json raw_preproc_kwargs.json (if raws were preprocessed) window_kwargs.json (if this is a windowed dataset) window_preproc_kwargs.json (if windows were preprocessed) target_name.json (if target_name is not None and dataset is raw)
- Parameters:
path (str) –
- Directory in which subdirectories are created to store
-raw.fif | -epo.fif and .json files to.
overwrite (bool) – Whether to delete old subdirectories that will be saved to in this call.
offset (int) – If provided, the integer is added to the id of the dataset in the concat. This is useful in the setting of very large datasets, where one dataset has to be processed and saved at a time to account for its original position.
BaseDataset from braindecode — windowed via create_windows_from_events.braindecodeDataLoader; supports parallel workers and on-the-fly augmentations.pytorchdatasets.load_dataset("EEGDash/ds004771").huggingface
Find datasets with the EEGDash APIQuery the catalogue, filter by task or modality, list candidates.
Load one EEG recordingResolve a single record to an MNE Raw with channels and events.
EEG recording to PyTorch DataLoaderWrap braindecode windows in a DataLoader for model training.
Preprocess EEG and create windowsFilter, resample, epoch — and persist the windowed dataset.
Save and reload prepared dataCache a windowed dataset to disk and reattach it without recompute.
Download a dataset locallyPrefetch BIDS files to a local cache and validate the layout.Swap any load_dataset(...) call for ds004771 to reproduce the tutorial on this dataset.
Citation
Chu-Hsuan Kuo, Chantel S. Prat (n.d.). EEG/ERP data from a Python Reading Task. 10.18112/openneuro.ds004771.v1.0.0
Provenance
¹Contributed to openneuro in BIDS format.
²Curated & ingested by the EEGDash catalog; see CITATION.cff for canonical reference.
³Persistent identifier: 10.18112/openneuro.ds004771.v1.0.0.
See Also#
eegdash.dataset.EEGDashDataseteegdash.dataset