EEGdash›OpenNeuro›DS004584
Iss. 4584 · 149 subjects · 149 recordings · CC0
Dataset Brief · Rest eyes open

DS004584: eeg dataset, 149 subjects#

Rest eyes open

Citation: Arun Singh arun.singh@usd.edu, Rachel Cole rachel-cole@uiowa.edu, Arturo Espinoza arturo-espinoza@uiowa.edu, Jim Cavanagh jcavanagh@unm.edu, Nandakumar Narayanan nandakumar-narayanan@uiowa.edu (—). Rest eyes open. 10.18112/openneuro.ds004584.v1.0.0

149-participant EEG dataset — Rest eyes open.

Data & curation Arun Singh arun.singh@usd.edu · Rachel Cole rachel-cole@uiowa.edu · Arturo Espinoza arturo-espinoza@uiowa.edu · Jim Cavanagh jcavanagh@unm.edu · Nandakumar Narayanan nandakumar-narayanan@uiowa.edu
EEG · 63 (119), 64 (29), 66 ch500 HzBIDS v1.2.1Task · RestParkinson'sResting StateClinical/Intervention
Layer 01Study
What was asked
Hypothesis, independent & dependent variables, paradigm, cohort, and the editorial caveats around what the recordings can and cannot answer.
Layer 02Signal · BIDS
What was recorded
Sidecars, channels & electrodes, coordinate system, event semantics, and quality stats from the NEMAR pipeline when available.
Layer 03Training · ML
What you can train on
Recommended access modes — MNE Raw, braindecode windows, PyTorch DataLoader — plus the targets the metadata makes addressable.
§ 01Access · Get started

Quickstart#

Install

pip install eegdash

Access the data

from eegdash.dataset import DS004584

dataset = DS004584(cache_dir="./data")
# Get the raw object of the first recording
raw = dataset.datasets[0].raw
print(raw.info)

Filter by subject

dataset = DS004584(cache_dir="./data", subject="01")

Advanced query

dataset = DS004584(
    cache_dir="./data",
    query={"subject": {"$in": ["01", "02"]}},
)

Iterate recordings

for rec in dataset:
    print(rec.subject, rec.raw.info['sfreq'])

If you use this dataset in your research, please cite the original authors.

BibTeX

@dataset{ds004584,
  title = {Rest eyes open},
  author = {Arun Singh arun.singh@usd.edu and Rachel Cole rachel-cole@uiowa.edu and Arturo Espinoza arturo-espinoza@uiowa.edu and Jim Cavanagh jcavanagh@unm.edu and Nandakumar Narayanan nandakumar-narayanan@uiowa.edu},
  doi = {10.18112/openneuro.ds004584.v1.0.0},
  url = {https://doi.org/10.18112/openneuro.ds004584.v1.0.0},
}
§ 02Study · The README

About This Dataset#

This experiment includes 149 subjects: 100 individuals with Parkinsons disease,

and 49 controls. EEG was recorded with a 64-channel BrainVision cap. Resting-state EEG was collected from patients sitting in a quiet room with their eyes open for two minutes.

§ 03Cohort · Participants

Cohort#

Dataset Statistics#

Age distribution (n=149, range 48–86 yr, mean 69.3 yr · sex per subject not reported)

455055606570758085

Channel counts (ch)

636466

Sampling frequencies: 500.0 Hz (n=149 recordings)

Total recording duration: 6 h 38 min

§ 04Signal · Electrodes & trace

Signal · Electrodes & live trace#

Fig. 01 Signal & montage 63 (119), 64 (29), 66 ch · EEG · 500 Hz · 149 subjects, 149 recordings
Live trace viewer — sub-021 · task-Rest

Showing one representative recording out of 149 subjects and 149 recordings in this dataset. Browse the full set on OpenNeuro; drop any other _eeg.{set,edf,bdf,vhdr} file onto the viewer (or pass ?eeg=<url>) to inspect it.

Electrode layout — EEG · 63 sensors — 63 channels

NEMAR Processing Statistics#

The plots below are generated by NEMAR’s automated EEG pipeline. The histogram shows pipeline success for data cleaning and ICA decomposition, the percentage of data frames and EEG channels retained after artefact removal, line noise per channel (RMS, dB), and the age/gender distribution of participants.

NEMAR pipeline statistics — DS004584
HED event descriptors word cloud HED event descriptors word cloud — DS004584
§ 05Manifest · BIDS tree

Manifest#

File Explorer#

Browse the BIDS file structure of this dataset. Records are fetched on demand from the EEGDash catalog the first time you open the explorer.

Recordings—
Files—
Subjects—
Modalities—
Click to load file structure…
Full dataset metadata table

Dataset ID

DS004584

Title

Rest eyes open

Author (year)

Singh2023_Rest_eyes

Canonical

—

Importable as

DS004584, Singh2023_Rest_eyes

Year

—

Authors

Arun Singh arun.singh@usd.edu, Rachel Cole rachel-cole@uiowa.edu, Arturo Espinoza arturo-espinoza@uiowa.edu, Jim Cavanagh jcavanagh@unm.edu, Nandakumar Narayanan nandakumar-narayanan@uiowa.edu

License

CC0

Citation / DOI

doi:10.18112/openneuro.ds004584.v1.0.0

Source links

OpenNeuro | NeMAR | Source URL
Copy-paste BibTeX
@dataset{ds004584,
  title = {Rest eyes open},
  author = {Arun Singh arun.singh@usd.edu and Rachel Cole rachel-cole@uiowa.edu and Arturo Espinoza arturo-espinoza@uiowa.edu and Jim Cavanagh jcavanagh@unm.edu and Nandakumar Narayanan nandakumar-narayanan@uiowa.edu},
  doi = {10.18112/openneuro.ds004584.v1.0.0},
  url = {https://doi.org/10.18112/openneuro.ds004584.v1.0.0},
}
§ 06API · Programmatic access

API Reference#

Signature
eegdash.dataset
class
eegdash.dataset.DS004584(cache_dir, query=None, s3_bucket=None, **kwargs)
Bases: EEGDashDataset
Author (year)Singh2023_Rest_eyes
Canonical—
Importable asDS004584 · Singh2023_Rest_eyes
Sourceeegdash/dataset/registry.py · [source ↗]
class eegdash.dataset.DS004584(cache_dir: str, query: dict | None = None, s3_bucket: str | None = None, **kwargs)[source]#

Rest eyes open

Study:

ds004584 (OpenNeuro)

Author (year):

Singh2023_Rest_eyes

Canonical:

—

Also importable as: DS004584, Singh2023_Rest_eyes.

Modality: eeg. Subjects: 149; recordings: 149; tasks: 1.

Parameters:

  • cache_dir (str | Path) – Directory where data are cached locally.

  • query (dict | None) – Additional MongoDB-style filters to AND with the dataset selection. Must not contain the key dataset.

  • s3_bucket (str | None) – Base S3 bucket used to locate the data.

  • **kwargs (dict) – Additional keyword arguments forwarded to EEGDashDataset.

data_dir#

Local dataset cache directory (cache_dir / dataset_id).

Type:

Path

query#

Merged query with the dataset filter applied.

Type:

dict

records#

Metadata records used to build the dataset, if pre-fetched.

Type:

list[dict] | None

Notes

Each item is a recording; recording-level metadata are available via dataset.description. query supports MongoDB-style filters on fields in ALLOWED_QUERY_FIELDS and is combined with the dataset filter. Dataset-specific caveats are not provided in the summary metadata.

References

OpenNeuro dataset: https://openneuro.org/datasets/ds004584 NeMAR dataset: https://nemar.org/dataexplorer/detail?dataset_id=ds004584 DOI: https://doi.org/10.18112/openneuro.ds004584.v1.0.0 NEMAR citation count: 2

Examples

>>> from eegdash.dataset import DS004584
>>> dataset = DS004584(cache_dir="./data")
>>> recording = dataset[0]
>>> raw = recording.load()
__init__(cache_dir: str, query: dict | None = None, s3_bucket: str | None = None, **kwargs)[source]#
save(path: str, overwrite: bool = False, offset: int = 0)[source]#

Save datasets to files by creating one subdirectory for each dataset:

path/
    0/
        0-raw.fif | 0-epo.fif
        description.json
        raw_preproc_kwargs.json (if raws were preprocessed)
        window_kwargs.json (if this is a windowed dataset)
        window_preproc_kwargs.json  (if windows were preprocessed)
        target_name.json (if target_name is not None and dataset is raw)
    1/
        1-raw.fif | 1-epo.fif
        description.json
        raw_preproc_kwargs.json (if raws were preprocessed)
        window_kwargs.json (if this is a windowed dataset)
        window_preproc_kwargs.json  (if windows were preprocessed)
        target_name.json (if target_name is not None and dataset is raw)
Parameters:

  • path (str) –

    Directory in which subdirectories are created to store

    -raw.fif | -epo.fif and .json files to.

  • overwrite (bool) – Whether to delete old subdirectories that will be saved to in this call.

  • offset (int) – If provided, the integer is added to the id of the dataset in the concat. This is useful in the setting of very large datasets, where one dataset has to be processed and saved at a time to account for its original position.

Access modesMNE → braindecode → PyTorch → ML
.rawMNE Raw object — standard tools (filter, epoch, ICA, plot_psd).mne
BaseConcatDatasetEach record is a lazy BaseDataset from braindecode — windowed via create_windows_from_events.braindecode
DataLoaderWraps the windowed dataset into a PyTorch DataLoader; supports parallel workers and on-the-fly augmentations.pytorch
Zarr cacheOptional braindecode Zarr mirror for fast resume; persisted to cache_dir.zarr
Hugging FacePre-bundled mirror at EEGDash/ds004584 · pull with datasets.load_dataset("EEGDash/ds004584").huggingface
Croissant 1.0Machine-readable JSON-LD descriptor — DS004584.croissant.json (MLCommons schema, ingestible by PyTorch / TensorFlow / JAX).mlcommons
Examples using EEGDashcurated · start here
Find datasets with the EEGDash APIQuery the catalogue, filter by task or modality, list candidates.Load one EEG recordingResolve a single record to an MNE Raw with channels and events.EEG recording to PyTorch DataLoaderWrap braindecode windows in a DataLoader for model training.Preprocess EEG and create windowsFilter, resample, epoch — and persist the windowed dataset.Save and reload prepared dataCache a windowed dataset to disk and reattach it without recompute.Download a dataset locallyPrefetch BIDS files to a local cache and validate the layout.

Swap any load_dataset(...) call for ds004584 to reproduce the tutorial on this dataset.

Citation

Arun Singh arun.singh@usd.edu, Rachel Cole rachel-cole@uiowa.edu, Arturo Espinoza arturo-espinoza@uiowa.edu, Jim Cavanagh jcavanagh@unm.edu, Nandakumar Narayanan nandakumar-narayanan@uiowa.edu (n.d.). Rest eyes open. 10.18112/openneuro.ds004584.v1.0.0

Provenance

¹Contributed to openneuro in BIDS format.

²Curated & ingested by the EEGDash catalog; see CITATION.cff for canonical reference.

³Persistent identifier: 10.18112/openneuro.ds004584.v1.0.0.

BIDS
BIDS v1.2.1
Sidecars
events · channels · electrodes · coordsystem · eeg.json
Machine-readable
schema.org/Dataset · Croissant

See Also#