DS000247#

MEG-BIDS OMEGA RestingState_sample

Access recordings and metadata through EEGDash.

Citation: Guiomar Niso, Jeremy Moreau, Elizabeth Bock, Francois Tadel, Sylvain Baillet (2018). MEG-BIDS OMEGA RestingState_sample. 10.18112/openneuro.ds000247.v1.0.2

Modality: meg Subjects: 5 Recordings: 190 License: CC0 Source: openneuro Citations: 3.0

Metadata: Complete (100%)

Quickstart#

Install

pip install eegdash

Access the data

from eegdash.dataset import DS000247

dataset = DS000247(cache_dir="./data")
# Get the raw object of the first recording
raw = dataset.datasets[0].raw
print(raw.info)

Filter by subject

dataset = DS000247(cache_dir="./data", subject="01")

Advanced query

dataset = DS000247(
    cache_dir="./data",
    query={"subject": {"$in": ["01", "02"]}},
)

Iterate recordings

for rec in dataset:
    print(rec.subject, rec.raw.info['sfreq'])

If you use this dataset in your research, please cite the original authors.

BibTeX

@dataset{ds000247,
  title = {MEG-BIDS OMEGA RestingState_sample},
  author = {Guiomar Niso and Jeremy Moreau and Elizabeth Bock and Francois Tadel and Sylvain Baillet},
  doi = {10.18112/openneuro.ds000247.v1.0.2},
  url = {https://doi.org/10.18112/openneuro.ds000247.v1.0.2},
}

About This Dataset#

OMEGA - Resting State Sample Dataset

License

View full README

OMEGA - Resting State Sample Dataset

License

  • This dataset was obtained from The Open MEG Archive (OMEGA, https://omega.bic.mni.mcgill.ca).

  • You are free to use all data in OMEGA for research purposes; please acknowledge its authors and cite the following reference in your publications if you have used data from OMEGA:

  • Niso G., Rogers C., Moreau J.T., Chen L.Y., Madjar C., Das S., Bock E., Tadel F., Evans A.C., Jolicoeur P., Baillet S. (2016). OMEGA: The Open MEG Archive. NeuroImage 124, 1182-1187. doi: https://doi.org/10.1016/j.neuroimage.2015.04.028. OMEGA is available at: https://omega.bic.mni.mcgill.ca

Description

Experiment

  • 5 subjects x 5 minute resting sessions, eyes open

MEG acquisition

  • Recorded at the Montreal Neurological Institute in 2012-2016

  • Acquisition with CTF 275 MEG system at 2400Hz sampling rate

  • Anti-aliasing low-pass filter at 600Hz, files may be saved with or without the CTF 3rd order gradient compensation

  • Recorded channels (at least 297), include: * 26 MEG reference sensors (#2-#27) * 270 MEG axial gradiometers (#28-#297) * 1 ECG bipolar (EEG057/#298) - Not available in the empty room recordings * 1 vertical EOG bipolar (EEG058/#299) - Not available in the empty room recordings * 1 horizontal EOG bipolar (EEG059/#300) - Not available in the empty room recordings

Head shape and fiducial points

  • 3D digitization using a Polhemus Fastrak device driven by Brainstorm. The .pos files contain: * The center of the CTF coils * The anatomical references we use in Brainstorm: nasion and ears as illustrated here * Around 100 head points distributed on the hard parts of the head (no soft tissues).

Subject anatomy

  • Structural T1 image (defaced for anonymization purposes)

  • Processed with FreeSurfer 5.3

  • The anatomical fiducials (NAS, LPA, RPA) have already been marked and saved in the files fiducials.m

BIDS

  • The data in this dataset has been organized according to the MEG-BIDS specification (Brain Imaging Data Structure, http://bids.neuroimaging.io) (Niso et al. 2018)

  • Niso G., Gorgolewski K.J., Bock E., Brooks T.L., Flandin G., Gramfort A., Henson R.N., Jas M., Litvak V., Moreau J., Oostenveld R., Schoffelen J.M., Tadel F., Wexler J., Baillet S. (2018). MEG-BIDS: an extension to the Brain Imaging Data Structure for magnetoencephalography. Scientific Data; 5, 180110. https://doi.org/10.1038/sdata.2018.110

Release history:

  • 2016-12-01: initial release

  • 2018-07-18: release OpenNeuro ds000247 (00001 and 00002)

Dataset Information#

Dataset ID

DS000247

Title

MEG-BIDS OMEGA RestingState_sample

Year

2018

Authors

Guiomar Niso, Jeremy Moreau, Elizabeth Bock, Francois Tadel, Sylvain Baillet

License

CC0

Citation / DOI

doi:10.18112/openneuro.ds000247.v1.0.2

Source links

OpenNeuro | NeMAR | Source URL

Copy-paste BibTeX
@dataset{ds000247,
  title = {MEG-BIDS OMEGA RestingState_sample},
  author = {Guiomar Niso and Jeremy Moreau and Elizabeth Bock and Francois Tadel and Sylvain Baillet},
  doi = {10.18112/openneuro.ds000247.v1.0.2},
  url = {https://doi.org/10.18112/openneuro.ds000247.v1.0.2},
}

Found an issue with this dataset?

If you encounter any problems with this dataset (missing files, incorrect metadata, loading errors, etc.), please let us know!

Report an Issue on GitHub

Technical Details#

Subjects & recordings
  • Subjects: 5

  • Recordings: 190

  • Tasks: 2

Channels & sampling rate
  • Channels: 297 (5), 330 (3), 300 (2)

  • Sampling rate (Hz): 2400.0

  • Duration (hours): 0.0

Tags
  • Pathology: Healthy

  • Modality: Resting State

  • Type: Resting-state

Files & format
  • Size on disk: 10.3 GB

  • File count: 190

  • Format: BIDS

License & citation
  • License: CC0

  • DOI: doi:10.18112/openneuro.ds000247.v1.0.2

Provenance

API Reference#

Use the DS000247 class to access this dataset programmatically.

class eegdash.dataset.DS000247(cache_dir: str, query: dict | None = None, s3_bucket: str | None = None, **kwargs)[source]#

Bases: EEGDashDataset

OpenNeuro dataset ds000247. Modality: meg; Experiment type: Resting-state; Subject type: Healthy. Subjects: 6; recordings: 10; tasks: 2.

Parameters:
  • cache_dir (str | Path) – Directory where data are cached locally.

  • query (dict | None) – Additional MongoDB-style filters to AND with the dataset selection. Must not contain the key dataset.

  • s3_bucket (str | None) – Base S3 bucket used to locate the data.

  • **kwargs (dict) – Additional keyword arguments forwarded to EEGDashDataset.

data_dir#

Local dataset cache directory (cache_dir / dataset_id).

Type:

Path

query#

Merged query with the dataset filter applied.

Type:

dict

records#

Metadata records used to build the dataset, if pre-fetched.

Type:

list[dict] | None

Notes

Each item is a recording; recording-level metadata are available via dataset.description. query supports MongoDB-style filters on fields in ALLOWED_QUERY_FIELDS and is combined with the dataset filter. Dataset-specific caveats are not provided in the summary metadata.

References

OpenNeuro dataset: https://openneuro.org/datasets/ds000247 NeMAR dataset: https://nemar.org/dataexplorer/detail?dataset_id=ds000247

Examples

>>> from eegdash.dataset import DS000247
>>> dataset = DS000247(cache_dir="./data")
>>> recording = dataset[0]
>>> raw = recording.load()
__init__(cache_dir: str, query: dict | None = None, s3_bucket: str | None = None, **kwargs)[source]#
save(path, overwrite=False)[source]#

Save the dataset to disk.

Parameters:
  • path (str or Path) – Destination file path.

  • overwrite (bool, default False) – If True, overwrite existing file.

Return type:

None

See Also#