DS000247#
MEG-BIDS OMEGA RestingState_sample
Access recordings and metadata through EEGDash.
Citation: Guiomar Niso, Jeremy Moreau, Elizabeth Bock, Francois Tadel, Sylvain Baillet (2018). MEG-BIDS OMEGA RestingState_sample. 10.18112/openneuro.ds000247.v1.0.2
Modality: meg Subjects: 5 Recordings: 190 License: CC0 Source: openneuro Citations: 3.0
Metadata: Complete (100%)
Quickstart#
Install
pip install eegdash
Access the data
from eegdash.dataset import DS000247
dataset = DS000247(cache_dir="./data")
# Get the raw object of the first recording
raw = dataset.datasets[0].raw
print(raw.info)
Filter by subject
dataset = DS000247(cache_dir="./data", subject="01")
Advanced query
dataset = DS000247(
cache_dir="./data",
query={"subject": {"$in": ["01", "02"]}},
)
Iterate recordings
for rec in dataset:
print(rec.subject, rec.raw.info['sfreq'])
If you use this dataset in your research, please cite the original authors.
BibTeX
@dataset{ds000247,
title = {MEG-BIDS OMEGA RestingState_sample},
author = {Guiomar Niso and Jeremy Moreau and Elizabeth Bock and Francois Tadel and Sylvain Baillet},
doi = {10.18112/openneuro.ds000247.v1.0.2},
url = {https://doi.org/10.18112/openneuro.ds000247.v1.0.2},
}
About This Dataset#
OMEGA - Resting State Sample Dataset
License
This dataset was obtained from The Open MEG Archive (OMEGA, https://omega.bic.mni.mcgill.ca).
View full README
OMEGA - Resting State Sample Dataset
License
This dataset was obtained from The Open MEG Archive (OMEGA, https://omega.bic.mni.mcgill.ca).
You are free to use all data in OMEGA for research purposes; please acknowledge its authors and cite the following reference in your publications if you have used data from OMEGA:
Niso G., Rogers C., Moreau J.T., Chen L.Y., Madjar C., Das S., Bock E., Tadel F., Evans A.C., Jolicoeur P., Baillet S. (2016). OMEGA: The Open MEG Archive. NeuroImage 124, 1182-1187. doi: https://doi.org/10.1016/j.neuroimage.2015.04.028. OMEGA is available at: https://omega.bic.mni.mcgill.ca
Description
Experiment
5 subjects x 5 minute resting sessions, eyes open
MEG acquisition
Recorded at the Montreal Neurological Institute in 2012-2016
Acquisition with CTF 275 MEG system at 2400Hz sampling rate
Anti-aliasing low-pass filter at 600Hz, files may be saved with or without the CTF 3rd order gradient compensation
Recorded channels (at least 297), include: * 26 MEG reference sensors (#2-#27) * 270 MEG axial gradiometers (#28-#297) * 1 ECG bipolar (EEG057/#298) - Not available in the empty room recordings * 1 vertical EOG bipolar (EEG058/#299) - Not available in the empty room recordings * 1 horizontal EOG bipolar (EEG059/#300) - Not available in the empty room recordings
Head shape and fiducial points
3D digitization using a Polhemus Fastrak device driven by Brainstorm. The .pos files contain: * The center of the CTF coils * The anatomical references we use in Brainstorm: nasion and ears as illustrated here * Around 100 head points distributed on the hard parts of the head (no soft tissues).
Subject anatomy
Structural T1 image (defaced for anonymization purposes)
Processed with FreeSurfer 5.3
The anatomical fiducials (NAS, LPA, RPA) have already been marked and saved in the files fiducials.m
BIDS
The data in this dataset has been organized according to the MEG-BIDS specification (Brain Imaging Data Structure, http://bids.neuroimaging.io) (Niso et al. 2018)
Niso G., Gorgolewski K.J., Bock E., Brooks T.L., Flandin G., Gramfort A., Henson R.N., Jas M., Litvak V., Moreau J., Oostenveld R., Schoffelen J.M., Tadel F., Wexler J., Baillet S. (2018). MEG-BIDS: an extension to the Brain Imaging Data Structure for magnetoencephalography. Scientific Data; 5, 180110. https://doi.org/10.1038/sdata.2018.110
Release history:
2016-12-01: initial release
2018-07-18: release OpenNeuro ds000247 (00001 and 00002)
Dataset Information#
Dataset ID |
|
Title |
MEG-BIDS OMEGA RestingState_sample |
Year |
2018 |
Authors |
Guiomar Niso, Jeremy Moreau, Elizabeth Bock, Francois Tadel, Sylvain Baillet |
License |
CC0 |
Citation / DOI |
|
Source links |
OpenNeuro | NeMAR | Source URL |
Copy-paste BibTeX
@dataset{ds000247,
title = {MEG-BIDS OMEGA RestingState_sample},
author = {Guiomar Niso and Jeremy Moreau and Elizabeth Bock and Francois Tadel and Sylvain Baillet},
doi = {10.18112/openneuro.ds000247.v1.0.2},
url = {https://doi.org/10.18112/openneuro.ds000247.v1.0.2},
}
Found an issue with this dataset?
If you encounter any problems with this dataset (missing files, incorrect metadata, loading errors, etc.), please let us know!
Technical Details#
Subjects: 5
Recordings: 190
Tasks: 2
Channels: 297 (5), 330 (3), 300 (2)
Sampling rate (Hz): 2400.0
Duration (hours): 0.0
Pathology: Healthy
Modality: Resting State
Type: Resting-state
Size on disk: 10.3 GB
File count: 190
Format: BIDS
License: CC0
DOI: doi:10.18112/openneuro.ds000247.v1.0.2
API Reference#
Use the DS000247 class to access this dataset programmatically.
- class eegdash.dataset.DS000247(cache_dir: str, query: dict | None = None, s3_bucket: str | None = None, **kwargs)[source]#
Bases:
EEGDashDatasetOpenNeuro dataset
ds000247. Modality:meg; Experiment type:Resting-state; Subject type:Healthy. Subjects: 6; recordings: 10; tasks: 2.- Parameters:
cache_dir (str | Path) – Directory where data are cached locally.
query (dict | None) – Additional MongoDB-style filters to AND with the dataset selection. Must not contain the key
dataset.s3_bucket (str | None) – Base S3 bucket used to locate the data.
**kwargs (dict) – Additional keyword arguments forwarded to
EEGDashDataset.
- data_dir#
Local dataset cache directory (
cache_dir / dataset_id).- Type:
Path
- query#
Merged query with the dataset filter applied.
- Type:
dict
- records#
Metadata records used to build the dataset, if pre-fetched.
- Type:
list[dict] | None
Notes
Each item is a recording; recording-level metadata are available via
dataset.description.querysupports MongoDB-style filters on fields inALLOWED_QUERY_FIELDSand is combined with the dataset filter. Dataset-specific caveats are not provided in the summary metadata.References
OpenNeuro dataset: https://openneuro.org/datasets/ds000247 NeMAR dataset: https://nemar.org/dataexplorer/detail?dataset_id=ds000247
Examples
>>> from eegdash.dataset import DS000247 >>> dataset = DS000247(cache_dir="./data") >>> recording = dataset[0] >>> raw = recording.load()
See Also#
eegdash.dataset.EEGDashDataseteegdash.dataset