DS002712: meg dataset, 25 subjects#
Numbers and Letters
Citation: Sara Aurtenetxe, Nicola Molinaro, Doug Davidson, Manuel Carreiras (—). Numbers and Letters. 10.18112/openneuro.ds002712.v1.0.1
25-participant MEG dataset — Numbers and Letters.
Quickstart#
Install
pip install eegdash
Access the data
from eegdash.dataset import DS002712
dataset = DS002712(cache_dir="./data")
# Get the raw object of the first recording
raw = dataset.datasets[0].raw
print(raw.info)
Filter by subject
dataset = DS002712(cache_dir="./data", subject="01")
Advanced query
dataset = DS002712(
cache_dir="./data",
query={"subject": {"$in": ["01", "02"]}},
)
Iterate recordings
for rec in dataset:
print(rec.subject, rec.raw.info['sfreq'])
If you use this dataset in your research, please cite the original authors.
BibTeX
@dataset{ds002712,
title = {Numbers and Letters},
author = {Sara Aurtenetxe and Nicola Molinaro and Doug Davidson and Manuel Carreiras},
doi = {10.18112/openneuro.ds002712.v1.0.1},
url = {https://doi.org/10.18112/openneuro.ds002712.v1.0.1},
}
About This Dataset#
OpenNeuro curator note: This dataset was previously accessible at ds001985. The dataset was reuploaded due to privacy considerations.
The experiment is composed by two runs
We here report the code triggers for each run:
Run 1: single item 10 = single numbers 15 = single letters 20 & 25 = single false fonts Run 2: strings 35 = strings numbers 40 = strings letters 45 & 50 = strings false fonts raw files could be split into two files (e.g., run-1 + run-11)
Cohort#
Dataset Statistics#
Age distribution (n=28, range 20–29 yr, mean 24.0 yr · sex per subject not reported)
Sex composition
Channel counts (ch)
Sampling frequencies: 1000.0 Hz (n=82 recordings)
Total recording duration: 24 h
Signal · Electrodes & live trace#
Live trace viewer — sub-13 · task-numbersletters · run-11
Showing one representative recording out of
25 subjects and 82 recordings in this dataset.
Browse the full set on OpenNeuro;
drop any other _meg.{set,edf,bdf,vhdr} file onto the
viewer (or pass ?meg=<url>) to inspect it.
Electrode layout — MEG · 306 sensors — 306 channels
NEMAR Processing Statistics#
The plots below are generated by NEMAR’s automated EEG pipeline. The histogram shows pipeline success for data cleaning and ICA decomposition, the percentage of data frames and EEG channels retained after artefact removal, line noise per channel (RMS, dB), and the age/gender distribution of participants.
HED event descriptors word cloud
Manifest#
File Explorer#
Browse the BIDS file structure of this dataset. Records are fetched on demand from the EEGDash catalog the first time you open the explorer.
Full dataset metadata table
Dataset ID |
|
Title |
Numbers and Letters |
Author (year) |
|
Canonical |
— |
Importable as |
|
Year |
— |
Authors |
Sara Aurtenetxe, Nicola Molinaro, Doug Davidson, Manuel Carreiras |
License |
CC0 |
Citation / DOI |
|
Source links |
OpenNeuro | NeMAR | Source URL |
Copy-paste BibTeX
@dataset{ds002712,
title = {Numbers and Letters},
author = {Sara Aurtenetxe and Nicola Molinaro and Doug Davidson and Manuel Carreiras},
doi = {10.18112/openneuro.ds002712.v1.0.1},
url = {https://doi.org/10.18112/openneuro.ds002712.v1.0.1},
}
API Reference#
eegdash.datasetEEGDashDatasetDS002712 · Aurtenetxe2020eegdash/dataset/registry.py · [source ↗]- class eegdash.dataset.DS002712(cache_dir: str, query: dict | None = None, s3_bucket: str | None = None, **kwargs)[source]#
Numbers and Letters
- Study:
ds002712(OpenNeuro)- Author (year):
Aurtenetxe2020- Canonical:
—
Also importable as:
DS002712,Aurtenetxe2020.Modality:
meg; Experiment type:Perception; Subject type:Healthy. Subjects: 25; recordings: 82; tasks: 1.- Parameters:
cache_dir (str | Path) – Directory where data are cached locally.
query (dict | None) – Additional MongoDB-style filters to AND with the dataset selection. Must not contain the key
dataset.s3_bucket (str | None) – Base S3 bucket used to locate the data.
**kwargs (dict) – Additional keyword arguments forwarded to
EEGDashDataset.
- data_dir#
Local dataset cache directory (
cache_dir / dataset_id).- Type:
Path
Notes
Each item is a recording; recording-level metadata are available via
dataset.description.querysupports MongoDB-style filters on fields inALLOWED_QUERY_FIELDSand is combined with the dataset filter. Dataset-specific caveats are not provided in the summary metadata.References
OpenNeuro dataset: https://openneuro.org/datasets/ds002712 NeMAR dataset: https://nemar.org/dataexplorer/detail?dataset_id=ds002712 DOI: https://doi.org/10.18112/openneuro.ds002712.v1.0.1 NEMAR citation count: 1
Examples
>>> from eegdash.dataset import DS002712 >>> dataset = DS002712(cache_dir="./data") >>> recording = dataset[0] >>> raw = recording.load()
- __init__(cache_dir: str, query: dict | None = None, s3_bucket: str | None = None, **kwargs)[source]#
- save(path: str, overwrite: bool = False, offset: int = 0)[source]#
Save datasets to files by creating one subdirectory for each dataset:
path/ 0/ 0-raw.fif | 0-epo.fif description.json raw_preproc_kwargs.json (if raws were preprocessed) window_kwargs.json (if this is a windowed dataset) window_preproc_kwargs.json (if windows were preprocessed) target_name.json (if target_name is not None and dataset is raw) 1/ 1-raw.fif | 1-epo.fif description.json raw_preproc_kwargs.json (if raws were preprocessed) window_kwargs.json (if this is a windowed dataset) window_preproc_kwargs.json (if windows were preprocessed) target_name.json (if target_name is not None and dataset is raw)
- Parameters:
path (str) –
- Directory in which subdirectories are created to store
-raw.fif | -epo.fif and .json files to.
overwrite (bool) – Whether to delete old subdirectories that will be saved to in this call.
offset (int) – If provided, the integer is added to the id of the dataset in the concat. This is useful in the setting of very large datasets, where one dataset has to be processed and saved at a time to account for its original position.
BaseDataset from braindecode — windowed via create_windows_from_events.braindecodeDataLoader; supports parallel workers and on-the-fly augmentations.pytorchdatasets.load_dataset("EEGDash/ds002712").huggingfaceSwap any load_dataset(...) call for ds002712 to reproduce the tutorial on this dataset.
Citation
Sara Aurtenetxe, Nicola Molinaro, Doug Davidson, Manuel Carreiras (n.d.). Numbers and Letters. 10.18112/openneuro.ds002712.v1.0.1
Provenance
¹Contributed to openneuro in BIDS format.
²Curated & ingested by the EEGDash catalog; see CITATION.cff for canonical reference.
³Persistent identifier: 10.18112/openneuro.ds002712.v1.0.1.
See Also#
eegdash.dataset.EEGDashDataseteegdash.dataset