EEGdash›OpenNeuro›DS006366
Iss. 6366 · 92 subjects · 148 recordings · CC0
Dataset Brief · Mouse Sleep Staging Validation dataset (MSSV)

DS006366: eeg dataset, 92 subjects#

Mouse Sleep Staging Validation dataset (MSSV)

Citation: Laura Rose, Alexander Neergaard Zahid, Javier García Ciudad, Christine Egebjerg, Louise Piilgaard, Frederikke Lynge Sørensen, Mie Andersen, Tessa Radovanovic, Anastasia Tsopanidou, Maiken Nedergaard, Sébastien Arthaud, Renato Maciel, Christelle Peyron, Chiara Berteotti, Viviana Lo Martire, Alessandro Silvani, Giovanna Zoccoli, Micaela Borsa, Antoine Adamantidis, Morten Mørup, Birgitte Rahbek Kornum (—). Mouse Sleep Staging Validation dataset (MSSV). 10.18112/openneuro.ds006366.v1.0.1

92-participant EEG dataset — Mouse Sleep Staging Validation dataset (MSSV).

Data & curation Laura Rose · Alexander Neergaard Zahid · Javier García Ciudad · Christine Egebjerg · Louise Piilgaard · Frederikke Lynge Sørensen · …
Funding Lundbeck Foundation (R344-2020-749)
EEG · 3 (71), 2 (43), 5 (34) ch128 HzBIDS 1.10.0Task · sleepHealthySleepSleep
Layer 01Study
What was asked
Hypothesis, independent & dependent variables, paradigm, cohort, and the editorial caveats around what the recordings can and cannot answer.
Layer 02Signal · BIDS
What was recorded
Sidecars, channels & electrodes, coordinate system, event semantics, and quality stats from the NEMAR pipeline when available.
Layer 03Training · ML
What you can train on
Recommended access modes — MNE Raw, braindecode windows, PyTorch DataLoader — plus the targets the metadata makes addressable.
§ 01Access · Get started

Quickstart#

Install

pip install eegdash

Access the data

from eegdash.dataset import DS006366

dataset = DS006366(cache_dir="./data")
# Get the raw object of the first recording
raw = dataset.datasets[0].raw
print(raw.info)

Filter by subject

dataset = DS006366(cache_dir="./data", subject="01")

Advanced query

dataset = DS006366(
    cache_dir="./data",
    query={"subject": {"$in": ["01", "02"]}},
)

Iterate recordings

for rec in dataset:
    print(rec.subject, rec.raw.info['sfreq'])

If you use this dataset in your research, please cite the original authors.

BibTeX

@dataset{ds006366,
  title = {Mouse Sleep Staging Validation dataset (MSSV)},
  author = {Laura Rose and Alexander Neergaard Zahid and Javier García Ciudad and Christine Egebjerg and Louise Piilgaard and Frederikke Lynge Sørensen and Mie Andersen and Tessa Radovanovic and Anastasia Tsopanidou and Maiken Nedergaard and Sébastien Arthaud and Renato Maciel and Christelle Peyron and Chiara Berteotti and Viviana Lo Martire and Alessandro Silvani and Giovanna Zoccoli and Micaela Borsa and Antoine Adamantidis and Morten Mørup and Birgitte Rahbek Kornum},
  doi = {10.18112/openneuro.ds006366.v1.0.1},
  url = {https://doi.org/10.18112/openneuro.ds006366.v1.0.1},
}
§ 02Study · The README

About This Dataset#

This dataset contains EEG recordings with sleep scores from 92 healthy mice. The recordings and sleep scores were collected from five different labs:

  • Department of Biomedical and Neuromotor Sciences, Università di Bologna, Italy.

  • Center for Translational Neuroscience, University of Copenhagen, Denmark.

  • Department of Neuroscience, University of Copenhagen, Denmark.

  • Zentrum für Experimentelle Neurologie, Department of Neurology, Inselspital University Hospital Bern, Bern, Switzerland.

  • Lyon Neuroscience Research Center, Lyon, France.

    For questions regarding this dataset, contact Birgitte Rahbek Kornum, kornum@sund.ku.dk

    Mouse Sleep Staging Validation dataset (MSSV)

§ 03Cohort · Participants

Cohort#

Dataset Statistics#

Channel counts (ch)

235

Sampling frequencies: 128.0 Hz (n=148 recordings)

Total recording duration: 2163 h

§ 04Signal · Electrodes & trace

Signal · Electrodes & live trace#

Fig. 01 Signal & montage 3 (71), 2 (43), 5 (34) ch · EEG · 128 Hz · 92 subjects, 148 recordings
Live trace viewer — sub-021 · task-sleep · run-1

Showing one representative recording out of 92 subjects and 148 recordings in this dataset. Browse the full set on OpenNeuro; drop any other _eeg.{set,edf,bdf,vhdr} file onto the viewer (or pass ?eeg=<url>) to inspect it.

No scalp electrode layout is currently indexed for this dataset. Once the eegdash montage registry ingests it, the interactive viewer will appear here automatically.

NEMAR Processing Statistics#

The plots below are generated by NEMAR’s automated EEG pipeline. The histogram shows pipeline success for data cleaning and ICA decomposition, the percentage of data frames and EEG channels retained after artefact removal, line noise per channel (RMS, dB), and the age/gender distribution of participants.

NEMAR pipeline statistics — DS006366
HED event descriptors word cloud HED event descriptors word cloud — DS006366
§ 05Manifest · BIDS tree

Manifest#

File Explorer#

Browse the BIDS file structure of this dataset. Records are fetched on demand from the EEGDash catalog the first time you open the explorer.

Recordings—
Files—
Subjects—
Modalities—
Click to load file structure…
Full dataset metadata table

Dataset ID

DS006366

Title

Mouse Sleep Staging Validation dataset (MSSV)

Author (year)

Rose2025

Canonical

—

Importable as

DS006366, Rose2025

Year

—

Authors

Laura Rose, Alexander Neergaard Zahid, Javier García Ciudad, Christine Egebjerg, Louise Piilgaard, Frederikke Lynge Sørensen, Mie Andersen, Tessa Radovanovic, Anastasia Tsopanidou, Maiken Nedergaard, Sébastien Arthaud, Renato Maciel, Christelle Peyron, Chiara Berteotti, Viviana Lo Martire, Alessandro Silvani, Giovanna Zoccoli, Micaela Borsa, Antoine Adamantidis, Morten Mørup, Birgitte Rahbek Kornum

License

CC0

Citation / DOI

doi:10.18112/openneuro.ds006366.v1.0.1

Source links

OpenNeuro | NeMAR | Source URL
Copy-paste BibTeX
@dataset{ds006366,
  title = {Mouse Sleep Staging Validation dataset (MSSV)},
  author = {Laura Rose and Alexander Neergaard Zahid and Javier García Ciudad and Christine Egebjerg and Louise Piilgaard and Frederikke Lynge Sørensen and Mie Andersen and Tessa Radovanovic and Anastasia Tsopanidou and Maiken Nedergaard and Sébastien Arthaud and Renato Maciel and Christelle Peyron and Chiara Berteotti and Viviana Lo Martire and Alessandro Silvani and Giovanna Zoccoli and Micaela Borsa and Antoine Adamantidis and Morten Mørup and Birgitte Rahbek Kornum},
  doi = {10.18112/openneuro.ds006366.v1.0.1},
  url = {https://doi.org/10.18112/openneuro.ds006366.v1.0.1},
}
§ 06API · Programmatic access

API Reference#

Signature
eegdash.dataset
class
eegdash.dataset.DS006366(cache_dir, query=None, s3_bucket=None, **kwargs)
Bases: EEGDashDataset
Author (year)Rose2025
Canonical—
Importable asDS006366 · Rose2025
Sourceeegdash/dataset/registry.py · [source ↗]
class eegdash.dataset.DS006366(cache_dir: str, query: dict | None = None, s3_bucket: str | None = None, **kwargs)[source]#

Mouse Sleep Staging Validation dataset (MSSV)

Study:

ds006366 (OpenNeuro)

Author (year):

Rose2025

Canonical:

—

Also importable as: DS006366, Rose2025.

Modality: eeg; Experiment type: Sleep; Subject type: Healthy. Subjects: 92; recordings: 148; tasks: 1.

Parameters:

  • cache_dir (str | Path) – Directory where data are cached locally.

  • query (dict | None) – Additional MongoDB-style filters to AND with the dataset selection. Must not contain the key dataset.

  • s3_bucket (str | None) – Base S3 bucket used to locate the data.

  • **kwargs (dict) – Additional keyword arguments forwarded to EEGDashDataset.

data_dir#

Local dataset cache directory (cache_dir / dataset_id).

Type:

Path

query#

Merged query with the dataset filter applied.

Type:

dict

records#

Metadata records used to build the dataset, if pre-fetched.

Type:

list[dict] | None

Notes

Each item is a recording; recording-level metadata are available via dataset.description. query supports MongoDB-style filters on fields in ALLOWED_QUERY_FIELDS and is combined with the dataset filter. Dataset-specific caveats are not provided in the summary metadata.

References

OpenNeuro dataset: https://openneuro.org/datasets/ds006366 NeMAR dataset: https://nemar.org/dataexplorer/detail?dataset_id=ds006366 DOI: https://doi.org/10.18112/openneuro.ds006366.v1.0.1

Examples

>>> from eegdash.dataset import DS006366
>>> dataset = DS006366(cache_dir="./data")
>>> recording = dataset[0]
>>> raw = recording.load()
__init__(cache_dir: str, query: dict | None = None, s3_bucket: str | None = None, **kwargs)[source]#
save(path: str, overwrite: bool = False, offset: int = 0)[source]#

Save datasets to files by creating one subdirectory for each dataset:

path/
    0/
        0-raw.fif | 0-epo.fif
        description.json
        raw_preproc_kwargs.json (if raws were preprocessed)
        window_kwargs.json (if this is a windowed dataset)
        window_preproc_kwargs.json  (if windows were preprocessed)
        target_name.json (if target_name is not None and dataset is raw)
    1/
        1-raw.fif | 1-epo.fif
        description.json
        raw_preproc_kwargs.json (if raws were preprocessed)
        window_kwargs.json (if this is a windowed dataset)
        window_preproc_kwargs.json  (if windows were preprocessed)
        target_name.json (if target_name is not None and dataset is raw)
Parameters:

  • path (str) –

    Directory in which subdirectories are created to store

    -raw.fif | -epo.fif and .json files to.

  • overwrite (bool) – Whether to delete old subdirectories that will be saved to in this call.

  • offset (int) – If provided, the integer is added to the id of the dataset in the concat. This is useful in the setting of very large datasets, where one dataset has to be processed and saved at a time to account for its original position.

Access modesMNE → braindecode → PyTorch → ML
.rawMNE Raw object — standard tools (filter, epoch, ICA, plot_psd).mne
BaseConcatDatasetEach record is a lazy BaseDataset from braindecode — windowed via create_windows_from_events.braindecode
DataLoaderWraps the windowed dataset into a PyTorch DataLoader; supports parallel workers and on-the-fly augmentations.pytorch
Zarr cacheOptional braindecode Zarr mirror for fast resume; persisted to cache_dir.zarr
Hugging FacePre-bundled mirror at EEGDash/ds006366 · pull with datasets.load_dataset("EEGDash/ds006366").huggingface
Croissant 1.0Machine-readable JSON-LD descriptor — DS006366.croissant.json (MLCommons schema, ingestible by PyTorch / TensorFlow / JAX).mlcommons
Examples using EEGDashcurated · start here
Find datasets with the EEGDash APIQuery the catalogue, filter by task or modality, list candidates.Load one EEG recordingResolve a single record to an MNE Raw with channels and events.EEG recording to PyTorch DataLoaderWrap braindecode windows in a DataLoader for model training.Preprocess EEG and create windowsFilter, resample, epoch — and persist the windowed dataset.Save and reload prepared dataCache a windowed dataset to disk and reattach it without recompute.Download a dataset locallyPrefetch BIDS files to a local cache and validate the layout.

Swap any load_dataset(...) call for ds006366 to reproduce the tutorial on this dataset.

Citation

Laura Rose, Alexander Neergaard Zahid, Javier García Ciudad, Christine Egebjerg, Louise Piilgaard, … (n.d.). Mouse Sleep Staging Validation dataset (MSSV). 10.18112/openneuro.ds006366.v1.0.1

Provenance

¹Contributed to openneuro in BIDS format.

²Curated & ingested by the EEGDash catalog; see CITATION.cff for canonical reference.

³Persistent identifier: 10.18112/openneuro.ds006366.v1.0.1.

BIDS
BIDS 1.10.0
Sidecars
events
Machine-readable
schema.org/Dataset · Croissant

See Also#