NM000221: eeg dataset, 19 subjects#
Alphawaves dataset
Citation: Grégoire Cattan, Pedro Luiz Coelho Rodrigues, Marco Congedo (2018). Alphawaves dataset.
19-participant EEG dataset — Alphawaves dataset.
Quickstart#
Install
pip install eegdash
Access the data
from eegdash.dataset import NM000221
dataset = NM000221(cache_dir="./data")
# Get the raw object of the first recording
raw = dataset.datasets[0].raw
print(raw.info)
Filter by subject
dataset = NM000221(cache_dir="./data", subject="01")
Advanced query
dataset = NM000221(
cache_dir="./data",
query={"subject": {"$in": ["01", "02"]}},
)
Iterate recordings
for rec in dataset:
print(rec.subject, rec.raw.info['sfreq'])
If you use this dataset in your research, please cite the original authors.
BibTeX
@dataset{nm000221,
title = {Alphawaves dataset},
author = {Grégoire Cattan and Pedro Luiz Coelho Rodrigues and Marco Congedo},
}
About This Dataset#
Alphawaves dataset
Schema: HED 8.4.0 | Browse: https://www.hedtags.org/hed-schema-browser
Alphawaves dataset
closed
├─ Experiment-structure
└─ Rest
View full README
Alphawaves dataset
closed
├─ Experiment-structure
└─ Rest
└─ Close, Eye
open
├─ Experiment-structure
└─ Rest
└─ Open, Eye
Paradigm-Specific Parameters
Detected paradigm: resting_state
Data Structure
Trials: 10
Preprocessing
Data state: raw
Preprocessing applied: False
Signal Processing
Feature extraction: ERS
Frequency bands: alpha=[8, 12] Hz
Tags
Pathology: Healthy
Modality: Resting State
Type: Resting-state
Documentation
DOI: 10.5281/zenodo.2348891
Associated paper DOI: hal-02086581
License: CC-BY-4.0
Investigators: Grégoire Cattan, Pedro Luiz Coelho Rodrigues, Marco Congedo
Senior author: Marco Congedo
Institution: GIPSA-lab, CNRS, University Grenoble-Alpes, Grenoble INP
Department: GIPSA-lab
Address: 11 rue des Mathématiques, Grenoble Campus BP46, F-38402, France
Country: FR
Repository: Zenodo
Data URL: https://doi.org/10.5281/zenodo.2348891
Publication year: 2018
Ethics approval: All participants provided written informed consent
How to acknowledge: Please cite: Cattan, Rodrigues & Congedo (2018). EEG Alpha Waves Dataset. GIPSA-lab Research Report. https://hal.science/hal-02086581
References
G. Cattan, P. L. Coelho Rodrigues, and M. Congedo, ‘EEG Alpha Waves Dataset’, 2018. Available: https://hal.archives-ouvertes.fr/hal-02086581 Rodrigues PLC. Alpha-Waves-Dataset [Internet]. Grenoble: GIPSA-lab; 2018. Available from: plcrodrigues/Alpha-Waves-Dataset Notes .. versionadded:: 1.1.0 Appelhoff, S., Sanderson, M., Brooks, T., Vliet, M., Quentin, R., Holdgraf, C., Chaumon, M., Mikulan, E., Tavabi, K., Hochenberger, R., Welke, D., Brunner, C., Rockhill, A., Larson, E., Gramfort, A. and Jas, M. (2019). MNE-BIDS: Organizing electrophysiological data into the BIDS format and facilitating their analysis. Journal of Open Source Software 4: (1896). https://doi.org/10.21105/joss.01896 Pernet, C. R., Appelhoff, S., Gorgolewski, K. J., Flandin, G., Phillips, C., Delorme, A., Oostenveld, R. (2019). EEG-BIDS, an extension to the brain imaging data structure for electroencephalography. Scientific Data, 6, 103. https://doi.org/10.1038/s41597-019-0104-8 Generated by MOABB 1.5.0 (Mother of All BCI Benchmarks) NeuroTechX/moabb
Cohort#
Dataset Statistics#
Age distribution by gender (n=19, range 26–26 yr, mean 25.0 yr)
Channel counts: 16 ch (n=19 recordings)
Sampling frequencies: 512.0 Hz (n=19 recordings)
Total recording duration: 57 min
Signal · Electrodes & live trace#
Live trace viewer — sub-13 · ses-0 · task-rstate · run-0
Showing one representative recording out of
19 subjects and 19 recordings in this dataset.
Browse the full set on OpenNeuro;
drop any other _eeg.{set,edf,bdf,vhdr} file onto the
viewer (or pass ?eeg=<url>) to inspect it.
Electrode layout — EEG · 16 sensors — 16 channels
NEMAR Processing Statistics#
The plots below are generated by NEMAR’s automated EEG pipeline. The histogram shows pipeline success for data cleaning and ICA decomposition, the percentage of data frames and EEG channels retained after artefact removal, line noise per channel (RMS, dB), and the age/gender distribution of participants.
HED event descriptors word cloud
Manifest#
File Explorer#
Browse the BIDS file structure of this dataset. Records are fetched on demand from the EEGDash catalog the first time you open the explorer.
Full dataset metadata table
Dataset ID |
|
Title |
Alphawaves dataset |
Author (year) |
|
Canonical |
— |
Importable as |
|
Year |
2018 |
Authors |
Grégoire Cattan, Pedro Luiz Coelho Rodrigues, Marco Congedo |
License |
CC-BY-4.0 |
Citation / DOI |
Unknown |
Source links |
OpenNeuro | NeMAR | Source URL |
API Reference#
eegdash.datasetEEGDashDatasetNM000221 · Cattan2017eegdash/dataset/registry.py · [source ↗]- class eegdash.dataset.NM000221(cache_dir: str, query: dict | None = None, s3_bucket: str | None = None, **kwargs)[source]#
Alphawaves dataset
- Study:
nm000221(NeMAR)- Author (year):
Cattan2017- Canonical:
—
Also importable as:
NM000221,Cattan2017.Modality:
eeg; Experiment type:Resting-state; Subject type:Healthy. Subjects: 19; recordings: 19; tasks: 1.- Parameters:
cache_dir (str | Path) – Directory where data are cached locally.
query (dict | None) – Additional MongoDB-style filters to AND with the dataset selection. Must not contain the key
dataset.s3_bucket (str | None) – Base S3 bucket used to locate the data.
**kwargs (dict) – Additional keyword arguments forwarded to
EEGDashDataset.
- data_dir#
Local dataset cache directory (
cache_dir / dataset_id).- Type:
Path
Notes
Each item is a recording; recording-level metadata are available via
dataset.description.querysupports MongoDB-style filters on fields inALLOWED_QUERY_FIELDSand is combined with the dataset filter. Dataset-specific caveats are not provided in the summary metadata.References
OpenNeuro dataset: https://openneuro.org/datasets/nm000221 NeMAR dataset: https://nemar.org/dataexplorer/detail?dataset_id=nm000221
Examples
>>> from eegdash.dataset import NM000221 >>> dataset = NM000221(cache_dir="./data") >>> recording = dataset[0] >>> raw = recording.load()
- __init__(cache_dir: str, query: dict | None = None, s3_bucket: str | None = None, **kwargs)[source]#
- save(path: str, overwrite: bool = False, offset: int = 0)[source]#
Save datasets to files by creating one subdirectory for each dataset:
path/ 0/ 0-raw.fif | 0-epo.fif description.json raw_preproc_kwargs.json (if raws were preprocessed) window_kwargs.json (if this is a windowed dataset) window_preproc_kwargs.json (if windows were preprocessed) target_name.json (if target_name is not None and dataset is raw) 1/ 1-raw.fif | 1-epo.fif description.json raw_preproc_kwargs.json (if raws were preprocessed) window_kwargs.json (if this is a windowed dataset) window_preproc_kwargs.json (if windows were preprocessed) target_name.json (if target_name is not None and dataset is raw)
- Parameters:
path (str) –
- Directory in which subdirectories are created to store
-raw.fif | -epo.fif and .json files to.
overwrite (bool) – Whether to delete old subdirectories that will be saved to in this call.
offset (int) – If provided, the integer is added to the id of the dataset in the concat. This is useful in the setting of very large datasets, where one dataset has to be processed and saved at a time to account for its original position.
BaseDataset from braindecode — windowed via create_windows_from_events.braindecodeDataLoader; supports parallel workers and on-the-fly augmentations.pytorchSwap any load_dataset(...) call for nm000221 to reproduce the tutorial on this dataset.
Citation
Grégoire Cattan, Pedro Luiz Coelho Rodrigues, Marco Congedo (2018). Alphawaves dataset.
Provenance
¹Contributed to nemar in BIDS format.
²Curated & ingested by the EEGDash catalog; see CITATION.cff for canonical reference.
See Also#
eegdash.dataset.EEGDashDataseteegdash.dataset