NM000311: eeg dataset, 25 subjects#
Multimodal upper-limb MI/ME EEG (Jeong et al. 2020)
Citation: Ji-Hoon Jeong, Jeong-Hyun Cho, Kyung-Hwan Shim, Byoung-Hee Kwon, Byeong-Hoo Lee, Do-Yeun Lee, Dae-Hyeok Lee, Seong-Whan Lee (2020). Multimodal upper-limb MI/ME EEG (Jeong et al. 2020). 10.82901/nemar.nm000311
25-participant EEG dataset — Multimodal upper-limb MI/ME EEG (Jeong et al. 2020).
Quickstart#
Install
pip install eegdash
Access the data
from eegdash.dataset import NM000311
dataset = NM000311(cache_dir="./data")
# Get the raw object of the first recording
raw = dataset.datasets[0].raw
print(raw.info)
Filter by subject
dataset = NM000311(cache_dir="./data", subject="01")
Advanced query
dataset = NM000311(
cache_dir="./data",
query={"subject": {"$in": ["01", "02"]}},
)
Iterate recordings
for rec in dataset:
print(rec.subject, rec.raw.info['sfreq'])
If you use this dataset in your research, please cite the original authors.
BibTeX
@dataset{nm000311,
title = {Multimodal upper-limb MI/ME EEG (Jeong et al. 2020)},
author = {Ji-Hoon Jeong and Jeong-Hyun Cho and Kyung-Hwan Shim and Byoung-Hee Kwon and Byeong-Hoo Lee and Do-Yeun Lee and Dae-Hyeok Lee and Seong-Whan Lee},
doi = {10.82901/nemar.nm000311},
url = {https://doi.org/10.82901/nemar.nm000311},
}
About This Dataset#
Multimodal MI+ME dataset from Jeong et al 2020.
Code: Jeong2020
Paradigm: imagery DOI: 10.1093/gigascience/giaa098 Subjects: 25 Sessions per subject: 3 Events: reach_forward=1, reach_backward=2, reach_left=3, reach_right=4, reach_up=5, reach_down=6, grasp_cup=7, grasp_ball=8, grasp_card=9, twist_pronation=10, twist_supination=11 Trial interval: [0, 4] s Runs per session: 3 File format: BrainVision
Jeong2020
Acquisition
Sampling rate: 1000.0 Hz Number of channels: 71 Channel types: eeg=60, eog=4, emg=7 Channel names: Fp1, AF7, AF3, AFz, F7, F5, F3, F1, Fz, FT7, FC5, FC3, FC1, T7, C5, C3, C1, Cz, TP7, CP5, CP3, CP1, CPz, P7, P5, P3, P1, Pz, PO7, PO3, POz, Fp2, AF4, AF8, F2, F4, F6, F8, FC2, FC4, FC6, FT8, C2, C4, C6, T8, CP2, CP4, CP6, TP8, P2, P4, P6, P8, PO4, PO8, O1, Oz, O2, Iz
View full README
Jeong2020
Acquisition
Sampling rate: 1000.0 Hz Number of channels: 71 Channel types: eeg=60, eog=4, emg=7 Channel names: Fp1, AF7, AF3, AFz, F7, F5, F3, F1, Fz, FT7, FC5, FC3, FC1, T7, C5, C3, C1, Cz, TP7, CP5, CP3, CP1, CPz, P7, P5, P3, P1, Pz, PO7, PO3, POz, Fp2, AF4, AF8, F2, F4, F6, F8, FC2, FC4, FC6, FT8, C2, C4, C6, T8, CP2, CP4, CP6, TP8, P2, P4, P6, P8, PO4, PO8, O1, Oz, O2, Iz Montage: standard_1005 Hardware: BrainAmp (BrainProducts GmbH) Reference: FCz Ground: Fpz Sensor type: actiCap Line frequency: 60.0 Hz Online filters: {‘highpass’: 0.016, ‘lowpass’: 1000}
Participants
Number of subjects: 25 Health status: healthy Age: min=24.0, max=32.0 Gender distribution: female=10, male=15 Handedness: right-handed BCI experience: naive Species: human
Experimental Protocol
Paradigm: imagery Number of classes: 11 Class labels: reach_forward, reach_backward, reach_left, reach_right, reach_up, reach_down, grasp_cup, grasp_ball, grasp_card, twist_pronation, twist_supination Trial duration: 4.0 s Study design: 11 intuitive upper-limb movement tasks: 6 reaching + 3 grasping + 2 wrist twisting. MI and real movement conditions, 3 sessions. Feedback type: none Stimulus type: text cues Stimulus modalities: visual Primary modality: visual Synchronicity: synchronous Mode: offline
HED Event Annotations
Schema: HED 8.4.0 | Browse: https://www.hedtags.org/hed-schema-browser reach_forward
├─ Sensory-event └─ Label/reach_forward reach_backward├─ Sensory-event └─ Label/reach_backward reach_left├─ Sensory-event └─ Label/reach_left reach_right├─ Sensory-event └─ Label/reach_right reach_up├─ Sensory-event └─ Label/reach_up reach_down├─ Sensory-event └─ Label/reach_down grasp_cup├─ Sensory-event └─ Label/grasp_cup grasp_ball├─ Sensory-event └─ Label/grasp_ball grasp_card├─ Sensory-event └─ Label/grasp_card twist_pronation├─ Sensory-event └─ Label/twist_pronation twist_supination├─ Sensory-event └─ Label/twist_supinationParadigm-Specific Parameters
Detected paradigm: motor_imagery Imagery tasks: reach_forward, reach_backward, reach_left, reach_right, reach_up, reach_down, grasp_cup, grasp_ball, grasp_card, twist_pronation, twist_supination Imagery duration: 4.0 s
Data Structure
Trials: 41250 Trials context: 25 subjects x 3 sessions x 550 trials (300 reaching + 150 grasping + 100 twisting)
Signal Processing
Classifiers: CSP+RLDA Feature extraction: CSP Frequency bands: mu_beta=[8.0, 30.0] Hz Spatial filters: CSP
Cross-Validation
Method: 10x10-fold Folds: 10 Evaluation type: within_session
BCI Application
Applications: motor_control, prosthetics Environment: laboratory Online feedback: False
Tags
Pathology: Healthy Modality: Motor Type: Research
Documentation
DOI: 10.1093/gigascience/giaa098 License: CC0-1.0 Investigators: Ji-Hoon Jeong, Jeong-Hyun Cho, Kyung-Hwan Shim, Byoung-Hee Kwon, Byeong-Hoo Lee, Do-Yeun Lee, Dae-Hyeok Lee, Seong-Whan Lee Institution: Korea University Country: KR Data URL: https://zenodo.org/records/19021436 Publication year: 2020
References
Jeong, J.-H., Cho, J.-H., Shim, K.-H., et al. (2020). Multimodal signal dataset for 11 intuitive movement tasks from single upper extremity during multiple recording sessions. GigaScience, 9(10), giaa098. https://doi.org/10.1093/gigascience/giaa098 Appelhoff, S., Sanderson, M., Brooks, T., Vliet, M., Quentin, R., Holdgraf, C., Chaumon, M., Mikulan, E., Tavabi, K., Hochenberger, R., Welke, D., Brunner, C., Rockhill, A., Larson, E., Gramfort, A. and Jas, M. (2019). MNE-BIDS: Organizing electrophysiological data into the BIDS format and facilitating their analysis. Journal of Open Source Software 4: (1896). https://doi.org/10.21105/joss.01896 Pernet, C. R., Appelhoff, S., Gorgolewski, K. J., Flandin, G., Phillips, C., Delorme, A., Oostenveld, R. (2019). EEG-BIDS, an extension to the brain imaging data structure for electroencephalography. Scientific Data, 6, 103. https://doi.org/10.1038/s41597-019-0104-8 Generated by MOABB 1.5.0 (Mother of All BCI Benchmarks) NeuroTechX/moabb
Cohort#
Dataset Statistics#
Channel counts: 71 ch (n=213 recordings)
Sampling frequencies: 1000.0 Hz (n=213 recordings)
Total recording duration: 124 h
Signal · Electrodes & live trace#
Live trace viewer — sub-1 · ses-0 · task-imagery · run-0
Showing one representative recording out of
25 subjects and 213 recordings in this dataset.
Browse the full set on OpenNeuro;
drop any other _eeg.{set,edf,bdf,vhdr} file onto the
viewer (or pass ?eeg=<url>) to inspect it.
Electrode layout — EEG · 60 sensors — 60 channels
NEMAR Processing Statistics#
The plots below are generated by NEMAR’s automated EEG pipeline. The histogram shows pipeline success for data cleaning and ICA decomposition, the percentage of data frames and EEG channels retained after artefact removal, line noise per channel (RMS, dB), and the age/gender distribution of participants.
HED event descriptors word cloud
Manifest#
File Explorer#
Browse the BIDS file structure of this dataset. Records are fetched on demand from the EEGDash catalog the first time you open the explorer.
Full dataset metadata table
Dataset ID |
|
Title |
Multimodal upper-limb MI/ME EEG (Jeong et al. 2020) |
Author (year) |
|
Canonical |
— |
Importable as |
|
Year |
2020 |
Authors |
Ji-Hoon Jeong, Jeong-Hyun Cho, Kyung-Hwan Shim, Byoung-Hee Kwon, Byeong-Hoo Lee, Do-Yeun Lee, Dae-Hyeok Lee, Seong-Whan Lee |
License |
CC0-1.0 |
Citation / DOI |
|
Source links |
OpenNeuro | NeMAR | Source URL |
Copy-paste BibTeX
@dataset{nm000311,
title = {Multimodal upper-limb MI/ME EEG (Jeong et al. 2020)},
author = {Ji-Hoon Jeong and Jeong-Hyun Cho and Kyung-Hwan Shim and Byoung-Hee Kwon and Byeong-Hoo Lee and Do-Yeun Lee and Dae-Hyeok Lee and Seong-Whan Lee},
doi = {10.82901/nemar.nm000311},
url = {https://doi.org/10.82901/nemar.nm000311},
}
API Reference#
eegdash.datasetEEGDashDatasetNM000311 · Jeong2020eegdash/dataset/registry.py · [source ↗]- class eegdash.dataset.NM000311(cache_dir: str, query: dict | None = None, s3_bucket: str | None = None, **kwargs)[source]#
Multimodal upper-limb MI/ME EEG (Jeong et al. 2020)
- Study:
nm000311(NeMAR)- Author (year):
Jeong2020- Canonical:
—
Also importable as:
NM000311,Jeong2020.Modality:
eeg; Experiment type:Motor; Subject type:Healthy. Subjects: 25; recordings: 213; tasks: 1.- Parameters:
cache_dir (str | Path) – Directory where data are cached locally.
query (dict | None) – Additional MongoDB-style filters to AND with the dataset selection. Must not contain the key
dataset.s3_bucket (str | None) – Base S3 bucket used to locate the data.
**kwargs (dict) – Additional keyword arguments forwarded to
EEGDashDataset.
- data_dir#
Local dataset cache directory (
cache_dir / dataset_id).- Type:
Path
Notes
Each item is a recording; recording-level metadata are available via
dataset.description.querysupports MongoDB-style filters on fields inALLOWED_QUERY_FIELDSand is combined with the dataset filter. Dataset-specific caveats are not provided in the summary metadata.References
OpenNeuro dataset: https://openneuro.org/datasets/nm000311 NeMAR dataset: https://nemar.org/dataexplorer/detail?dataset_id=nm000311 DOI: https://doi.org/10.82901/nemar.nm000311
Examples
>>> from eegdash.dataset import NM000311 >>> dataset = NM000311(cache_dir="./data") >>> recording = dataset[0] >>> raw = recording.load()
- __init__(cache_dir: str, query: dict | None = None, s3_bucket: str | None = None, **kwargs)[source]#
- save(path: str, overwrite: bool = False, offset: int = 0)[source]#
Save datasets to files by creating one subdirectory for each dataset:
path/ 0/ 0-raw.fif | 0-epo.fif description.json raw_preproc_kwargs.json (if raws were preprocessed) window_kwargs.json (if this is a windowed dataset) window_preproc_kwargs.json (if windows were preprocessed) target_name.json (if target_name is not None and dataset is raw) 1/ 1-raw.fif | 1-epo.fif description.json raw_preproc_kwargs.json (if raws were preprocessed) window_kwargs.json (if this is a windowed dataset) window_preproc_kwargs.json (if windows were preprocessed) target_name.json (if target_name is not None and dataset is raw)
- Parameters:
path (str) –
- Directory in which subdirectories are created to store
-raw.fif | -epo.fif and .json files to.
overwrite (bool) – Whether to delete old subdirectories that will be saved to in this call.
offset (int) – If provided, the integer is added to the id of the dataset in the concat. This is useful in the setting of very large datasets, where one dataset has to be processed and saved at a time to account for its original position.
BaseDataset from braindecode — windowed via create_windows_from_events.braindecodeDataLoader; supports parallel workers and on-the-fly augmentations.pytorchSwap any load_dataset(...) call for nm000311 to reproduce the tutorial on this dataset.
Citation
Ji-Hoon Jeong, Jeong-Hyun Cho, Kyung-Hwan Shim, Byoung-Hee Kwon, Byeong-Hoo Lee, … (2020). Multimodal upper-limb MI/ME EEG (Jeong et al. 2020). 10.82901/nemar.nm000311
Provenance
¹Contributed to nemar in BIDS format.
²Curated & ingested by the EEGDash catalog; see CITATION.cff for canonical reference.
³Persistent identifier: 10.82901/nemar.nm000311.
See Also#
eegdash.dataset.EEGDashDataseteegdash.dataset