NM000130: eeg dataset, 100 subjects#

Liu2022 – eldBETA SSVEP benchmark dataset for elderly population

Access recordings and metadata through EEGDash.

Citation: Bingchuan Liu, Yijun Wang, Xiaorong Gao, Xiaogang Chen (2019). Liu2022 – eldBETA SSVEP benchmark dataset for elderly population. 10.82901/nemar.nm000130

Modality: eeg Subjects: 100 Recordings: 700 License: CC BY 4.0 Source: nemar

Metadata: Complete (100%)

Quickstart#

Install

pip install eegdash

Access the data

from eegdash.dataset import NM000130

dataset = NM000130(cache_dir="./data")
# Get the raw object of the first recording
raw = dataset.datasets[0].raw
print(raw.info)

Filter by subject

dataset = NM000130(cache_dir="./data", subject="01")

Advanced query

dataset = NM000130(
    cache_dir="./data",
    query={"subject": {"$in": ["01", "02"]}},
)

Iterate recordings

for rec in dataset:
    print(rec.subject, rec.raw.info['sfreq'])

If you use this dataset in your research, please cite the original authors.

BibTeX

@dataset{nm000130,
  title = {Liu2022 – eldBETA SSVEP benchmark dataset for elderly population},
  author = {Bingchuan Liu and Yijun Wang and Xiaorong Gao and Xiaogang Chen},
  doi = {10.82901/nemar.nm000130},
  url = {https://doi.org/10.82901/nemar.nm000130},
}

About This Dataset#

DOI

eldBETA SSVEP benchmark dataset for elderly population

eldBETA SSVEP benchmark dataset for elderly population.

Dataset Overview

  • Code: Liu2022EldBETA

  • Paradigm: ssvep

View full README

DOI

eldBETA SSVEP benchmark dataset for elderly population

eldBETA SSVEP benchmark dataset for elderly population.

Dataset Overview

  • Code: Liu2022EldBETA

  • Paradigm: ssvep

  • DOI: 10.1038/s41597-022-01372-9

  • Subjects: 100

  • Sessions per subject: 7

  • Events: 8=1, 9.5=2, 11=3, 8.5=4, 10=5, 11.5=6, 9=7, 10.5=8, 12=9

  • Trial interval: [0, 6.0] s

  • File format: GDF (BIDS)

Acquisition

  • Sampling rate: 1000.0 Hz

  • Number of channels: 64

  • Channel types: eeg=64

  • Montage: standard_1005

  • Hardware: Synamps2 (Neuroscan)

  • Reference: Cz

  • Line frequency: 50.0 Hz

  • Impedance threshold: 20 kOhm

Participants

  • Number of subjects: 100

  • Health status: healthy

  • Age: mean=63.17, std=6.05, min=51, max=81

  • Gender distribution: male=33, female=67

Experimental Protocol

  • Paradigm: ssvep

  • Task type: 9-target SSVEP speller

  • Number of classes: 9

  • Class labels: 8, 9.5, 11, 8.5, 10, 11.5, 9, 10.5, 12

  • Trial duration: 5.0 s

  • Feedback type: visual

  • Stimulus type: JFPM visual flicker

  • Stimulus modalities: visual

  • Primary modality: visual

  • Synchronicity: synchronous

  • Mode: online

  • Training/test split: False

HED Event Annotations

Schema: HED 8.4.0 | Browse: https://www.hedtags.org/hed-schema-browser

8
     ├─ Sensory-event
     ├─ Experimental-stimulus
     ├─ Visual-presentation
     └─ Label/8

9.5
     ├─ Sensory-event
     ├─ Experimental-stimulus
     ├─ Visual-presentation
     └─ Label/9_5

11
     ├─ Sensory-event
     ├─ Experimental-stimulus
     ├─ Visual-presentation
     └─ Label/11

8.5
     ├─ Sensory-event
     ├─ Experimental-stimulus
     ├─ Visual-presentation
     └─ Label/8_5

10
     ├─ Sensory-event
     ├─ Experimental-stimulus
     ├─ Visual-presentation
     └─ Label/10

11.5
     ├─ Sensory-event
     ├─ Experimental-stimulus
     ├─ Visual-presentation
     └─ Label/11_5

9
     ├─ Sensory-event
     ├─ Experimental-stimulus
     ├─ Visual-presentation
     └─ Label/9

10.5
     ├─ Sensory-event
     ├─ Experimental-stimulus
     ├─ Visual-presentation
     └─ Label/10_5

12
├─ Sensory-event
├─ Experimental-stimulus
├─ Visual-presentation
└─ Label/12

Paradigm-Specific Parameters

  • Detected paradigm: ssvep

  • Stimulus frequencies: [8.0, 8.5, 9.0, 9.5, 10.0, 10.5, 11.0, 11.5, 12.0] Hz

  • Frequency resolution: 0.5 Hz

Data Structure

  • Trials: 63

  • Blocks per session: 7

Signal Processing

  • Classifiers: TDCA, ms-eCCA, ensemble_msTRCA, ensemble_TRCA, Extended_CCA, ITCCA, L1MCCA, FBCCA, CVARS, tMSI, MEC, MSI, CCA

  • Feature extraction: TDCA, CCA, FBCCA, TRCA, ms-eCCA, msTRCA, Extended_CCA, ITCCA, L1MCCA, CVARS, tMSI, MEC, MSI

  • Frequency bands: bandpass=[6.0, 100.0] Hz

  • Spatial filters: TDCA, CCA, TRCA, ms-eCCA, msTRCA, Extended_CCA, ITCCA, L1MCCA, CVARS, MEC, MSI, tMSI

Cross-Validation

  • Method: leave-one-block-out

  • Folds: 7

  • Evaluation type: within_subject

BCI Application

  • Applications: speller

  • Environment: lab

  • Online feedback: True

Tags

  • Pathology: healthy

  • Modality: visual

  • Type: perception

Documentation

  • DOI: 10.1038/s41597-022-01372-9

  • License: CC BY 4.0

  • Investigators: Bingchuan Liu, Yijun Wang, Xiaorong Gao, Xiaogang Chen

  • Senior author: Xiaogang Chen

  • Institution: Tsinghua University

  • Department: Department of Biomedical Engineering, School of Medicine, Tsinghua University

  • Country: CN

  • Repository: Figshare

  • Data URL: https://doi.org/10.6084/m9.figshare.18032669

  • Publication year: 2022

  • Funding: National Natural Science Foundation of China (No. 62171473); Doctoral Brain+X Seed Grant Program of Tsinghua University; Strategic Priority Research Program of Chinese Academy of Sciences (No. XDB32040200)

  • Ethics approval: Institutional Review Board of Tsinghua University, No. 20210032

  • Keywords: SSVEP, BCI, EEG, elderly, aging, benchmark, JFPM

References

B. Liu, Y. Wang, X. Gao, and X. Chen, “eldBETA: A Large Eldercare-oriented Benchmark Database of SSVEP-BCI for the Aging Population,” Scientific Data, vol. 9, p. 252, 2022. DOI: 10.1038/s41597-022-01372-9 Appelhoff, S., Sanderson, M., Brooks, T., Vliet, M., Quentin, R., Holdgraf, C., Chaumon, M., Mikulan, E., Tavabi, K., Hochenberger, R., Welke, D., Brunner, C., Rockhill, A., Larson, E., Gramfort, A. and Jas, M. (2019). MNE-BIDS: Organizing electrophysiological data into the BIDS format and facilitating their analysis. Journal of Open Source Software 4: (1896). https://doi.org/10.21105/joss.01896 Pernet, C. R., Appelhoff, S., Gorgolewski, K. J., Flandin, G., Phillips, C., Delorme, A., Oostenveld, R. (2019). EEG-BIDS, an extension to the brain imaging data structure for electroencephalography. Scientific Data, 6, 103. https://doi.org/10.1038/s41597-019-0104-8 Generated by MOABB 1.4.3 (Mother of All BCI Benchmarks) NeuroTechX/moabb

Dataset Information#

Dataset ID

NM000130

Title

Liu2022 – eldBETA SSVEP benchmark dataset for elderly population

Author (year)

Liu2022

Canonical

Importable as

NM000130, Liu2022

Year

2019

Authors

Bingchuan Liu, Yijun Wang, Xiaorong Gao, Xiaogang Chen

License

CC BY 4.0

Citation / DOI

10.82901/nemar.nm000130

Source links

OpenNeuro | NeMAR | Source URL

Copy-paste BibTeX
@dataset{nm000130,
  title = {Liu2022 – eldBETA SSVEP benchmark dataset for elderly population},
  author = {Bingchuan Liu and Yijun Wang and Xiaorong Gao and Xiaogang Chen},
  doi = {10.82901/nemar.nm000130},
  url = {https://doi.org/10.82901/nemar.nm000130},
}

Found an issue with this dataset?

If you encounter any problems with this dataset (missing files, incorrect metadata, loading errors, etc.), please let us know!

Report an Issue on GitHub

Technical Details#

Subjects & recordings
  • Subjects: 100

  • Recordings: 700

  • Tasks: 1

Channels & sampling rate
  • Channels: 64

  • Sampling rate (Hz): 1000.0

  • Duration (hours): 20.17517222222222

Tags
  • Pathology: Healthy

  • Modality: Visual

  • Type: Perception

Files & format
  • Size on disk: 17.4 GB

  • File count: 700

  • Format: BIDS

License & citation
  • License: CC BY 4.0

  • DOI: 10.82901/nemar.nm000130

Provenance

Electrode Layout#

Electrode layout — EEG · 57 sensors — 57 channels

Dataset Statistics#

Age distribution (n=100, range 70–70 yr)

70

Sex distribution

67
33
Female  Male  Total: 100

Channel counts: 64 ch (n=700 recordings)

Sampling frequencies: 1000.0 Hz (n=700 recordings)

Total recording duration: 20 h 10 min

NEMAR Processing Statistics#

The plots below are generated by NEMAR’s automated EEG pipeline. The histogram shows pipeline success for data cleaning and ICA decomposition, the percentage of data frames and EEG channels retained after artefact removal, line noise per channel (RMS, dB), and the age/gender distribution of participants.

HED event descriptors word cloud HED event descriptors word cloud — NM000130

File Explorer#

Browse the BIDS file structure of this dataset. Records are fetched on demand from the EEGDash catalog the first time you open the explorer.

Files:
Size:
Subjects:
Click to load file structure…

API Reference#

Use the NM000130 class to access this dataset programmatically.

class eegdash.dataset.NM000130(cache_dir: str, query: dict | None = None, s3_bucket: str | None = None, **kwargs)[source]#

Bases: EEGDashDataset

Liu2022 – eldBETA SSVEP benchmark dataset for elderly population

Study:

nm000130 (NeMAR)

Author (year):

Liu2022

Canonical:

Also importable as: NM000130, Liu2022.

Modality: eeg; Experiment type: Perception; Subject type: Healthy. Subjects: 100; recordings: 700; tasks: 1.

Parameters:
  • cache_dir (str | Path) – Directory where data are cached locally.

  • query (dict | None) – Additional MongoDB-style filters to AND with the dataset selection. Must not contain the key dataset.

  • s3_bucket (str | None) – Base S3 bucket used to locate the data.

  • **kwargs (dict) – Additional keyword arguments forwarded to EEGDashDataset.

data_dir#

Local dataset cache directory (cache_dir / dataset_id).

Type:

Path

query#

Merged query with the dataset filter applied.

Type:

dict

records#

Metadata records used to build the dataset, if pre-fetched.

Type:

list[dict] | None

Notes

Each item is a recording; recording-level metadata are available via dataset.description. query supports MongoDB-style filters on fields in ALLOWED_QUERY_FIELDS and is combined with the dataset filter. Dataset-specific caveats are not provided in the summary metadata.

References

OpenNeuro dataset: https://openneuro.org/datasets/nm000130 NeMAR dataset: https://nemar.org/dataexplorer/detail?dataset_id=nm000130 DOI: https://doi.org/10.82901/nemar.nm000130

Examples

>>> from eegdash.dataset import NM000130
>>> dataset = NM000130(cache_dir="./data")
>>> recording = dataset[0]
>>> raw = recording.load()
__init__(cache_dir: str, query: dict | None = None, s3_bucket: str | None = None, **kwargs)[source]#
save(path: str, overwrite: bool = False, offset: int = 0)[source]#

Save datasets to files by creating one subdirectory for each dataset:

path/
    0/
        0-raw.fif | 0-epo.fif
        description.json
        raw_preproc_kwargs.json (if raws were preprocessed)
        window_kwargs.json (if this is a windowed dataset)
        window_preproc_kwargs.json  (if windows were preprocessed)
        target_name.json (if target_name is not None and dataset is raw)
    1/
        1-raw.fif | 1-epo.fif
        description.json
        raw_preproc_kwargs.json (if raws were preprocessed)
        window_kwargs.json (if this is a windowed dataset)
        window_preproc_kwargs.json  (if windows were preprocessed)
        target_name.json (if target_name is not None and dataset is raw)
Parameters:
  • path (str) –

    Directory in which subdirectories are created to store

    -raw.fif | -epo.fif and .json files to.

  • overwrite (bool) – Whether to delete old subdirectories that will be saved to in this call.

  • offset (int) – If provided, the integer is added to the id of the dataset in the concat. This is useful in the setting of very large datasets, where one dataset has to be processed and saved at a time to account for its original position.

See Also#