NM000130: eeg dataset, 100 subjects#
Liu2022 – eldBETA SSVEP benchmark dataset for elderly population
Citation: Bingchuan Liu, Yijun Wang, Xiaorong Gao, Xiaogang Chen (2019). Liu2022 – eldBETA SSVEP benchmark dataset for elderly population. 10.82901/nemar.nm000130
100-participant EEG dataset — Liu2022 – eldBETA SSVEP benchmark dataset for elderly population.
Quickstart#
Install
pip install eegdash
Access the data
from eegdash.dataset import NM000130
dataset = NM000130(cache_dir="./data")
# Get the raw object of the first recording
raw = dataset.datasets[0].raw
print(raw.info)
Filter by subject
dataset = NM000130(cache_dir="./data", subject="01")
Advanced query
dataset = NM000130(
cache_dir="./data",
query={"subject": {"$in": ["01", "02"]}},
)
Iterate recordings
for rec in dataset:
print(rec.subject, rec.raw.info['sfreq'])
If you use this dataset in your research, please cite the original authors.
BibTeX
@dataset{nm000130,
title = {Liu2022 – eldBETA SSVEP benchmark dataset for elderly population},
author = {Bingchuan Liu and Yijun Wang and Xiaorong Gao and Xiaogang Chen},
doi = {10.82901/nemar.nm000130},
url = {https://doi.org/10.82901/nemar.nm000130},
}
About This Dataset#
eldBETA SSVEP benchmark dataset for elderly population.
Schema: HED 8.4.0 | Browse: https://www.hedtags.org/hed-schema-browser
eldBETA SSVEP benchmark dataset for elderly population
8
View full README
eldBETA SSVEP benchmark dataset for elderly population
8
├─ Sensory-event
├─ Experimental-stimulus
├─ Visual-presentation
└─ Label/8
9.5
├─ Sensory-event
├─ Experimental-stimulus
├─ Visual-presentation
└─ Label/9_5
11
├─ Sensory-event
├─ Experimental-stimulus
├─ Visual-presentation
└─ Label/11
8.5
├─ Sensory-event
├─ Experimental-stimulus
├─ Visual-presentation
└─ Label/8_5
10
├─ Sensory-event
├─ Experimental-stimulus
├─ Visual-presentation
└─ Label/10
11.5
├─ Sensory-event
├─ Experimental-stimulus
├─ Visual-presentation
└─ Label/11_5
9
├─ Sensory-event
├─ Experimental-stimulus
├─ Visual-presentation
└─ Label/9
10.5
├─ Sensory-event
├─ Experimental-stimulus
├─ Visual-presentation
└─ Label/10_5
12
├─ Sensory-event
├─ Experimental-stimulus
├─ Visual-presentation
└─ Label/12
Paradigm-Specific Parameters
Detected paradigm: ssvep
Stimulus frequencies: [8.0, 8.5, 9.0, 9.5, 10.0, 10.5, 11.0, 11.5, 12.0] Hz
Frequency resolution: 0.5 Hz
Data Structure
Trials: 63
Blocks per session: 7
Signal Processing
Classifiers: TDCA, ms-eCCA, ensemble_msTRCA, ensemble_TRCA, Extended_CCA, ITCCA, L1MCCA, FBCCA, CVARS, tMSI, MEC, MSI, CCA
Feature extraction: TDCA, CCA, FBCCA, TRCA, ms-eCCA, msTRCA, Extended_CCA, ITCCA, L1MCCA, CVARS, tMSI, MEC, MSI
Frequency bands: bandpass=[6.0, 100.0] Hz
Spatial filters: TDCA, CCA, TRCA, ms-eCCA, msTRCA, Extended_CCA, ITCCA, L1MCCA, CVARS, MEC, MSI, tMSI
Cross-Validation
Method: leave-one-block-out
Folds: 7
Evaluation type: within_subject
BCI Application
Applications: speller
Environment: lab
Online feedback: True
Tags
Pathology: healthy
Modality: visual
Type: perception
Documentation
DOI: 10.1038/s41597-022-01372-9
License: CC BY 4.0
Investigators: Bingchuan Liu, Yijun Wang, Xiaorong Gao, Xiaogang Chen
Senior author: Xiaogang Chen
Institution: Tsinghua University
Department: Department of Biomedical Engineering, School of Medicine, Tsinghua University
Country: CN
Repository: Figshare
Publication year: 2022
Funding: National Natural Science Foundation of China (No. 62171473); Doctoral Brain+X Seed Grant Program of Tsinghua University; Strategic Priority Research Program of Chinese Academy of Sciences (No. XDB32040200)
Ethics approval: Institutional Review Board of Tsinghua University, No. 20210032
Keywords: SSVEP, BCI, EEG, elderly, aging, benchmark, JFPM
References
B. Liu, Y. Wang, X. Gao, and X. Chen, “eldBETA: A Large Eldercare-oriented Benchmark Database of SSVEP-BCI for the Aging Population,” Scientific Data, vol. 9, p. 252, 2022. DOI: 10.1038/s41597-022-01372-9 Appelhoff, S., Sanderson, M., Brooks, T., Vliet, M., Quentin, R., Holdgraf, C., Chaumon, M., Mikulan, E., Tavabi, K., Hochenberger, R., Welke, D., Brunner, C., Rockhill, A., Larson, E., Gramfort, A. and Jas, M. (2019). MNE-BIDS: Organizing electrophysiological data into the BIDS format and facilitating their analysis. Journal of Open Source Software 4: (1896). https://doi.org/10.21105/joss.01896 Pernet, C. R., Appelhoff, S., Gorgolewski, K. J., Flandin, G., Phillips, C., Delorme, A., Oostenveld, R. (2019). EEG-BIDS, an extension to the brain imaging data structure for electroencephalography. Scientific Data, 6, 103. https://doi.org/10.1038/s41597-019-0104-8 Generated by MOABB 1.4.3 (Mother of All BCI Benchmarks) NeuroTechX/moabb
Cohort#
Dataset Statistics#
Age distribution by gender (n=100, range 70–70 yr, mean 70.0 yr)
Sex composition
Channel counts: 64 ch (n=700 recordings)
Sampling frequencies: 1000.0 Hz (n=700 recordings)
Total recording duration: 20 h 10 min
Signal · Electrodes & live trace#
Live trace viewer — sub-13 · ses-4 · task-ssvep · run-0
Showing one representative recording out of
100 subjects and 700 recordings in this dataset.
Browse the full set on OpenNeuro;
drop any other _eeg.{set,edf,bdf,vhdr} file onto the
viewer (or pass ?eeg=<url>) to inspect it.
Electrode layout — EEG · 57 sensors — 57 channels
NEMAR Processing Statistics#
The plots below are generated by NEMAR’s automated EEG pipeline. The histogram shows pipeline success for data cleaning and ICA decomposition, the percentage of data frames and EEG channels retained after artefact removal, line noise per channel (RMS, dB), and the age/gender distribution of participants.
HED event descriptors word cloud
Manifest#
File Explorer#
Browse the BIDS file structure of this dataset. Records are fetched on demand from the EEGDash catalog the first time you open the explorer.
Full dataset metadata table
Dataset ID |
|
Title |
Liu2022 – eldBETA SSVEP benchmark dataset for elderly population |
Author (year) |
|
Canonical |
— |
Importable as |
|
Year |
2019 |
Authors |
Bingchuan Liu, Yijun Wang, Xiaorong Gao, Xiaogang Chen |
License |
CC BY 4.0 |
Citation / DOI |
|
Source links |
OpenNeuro | NeMAR | Source URL |
Copy-paste BibTeX
@dataset{nm000130,
title = {Liu2022 – eldBETA SSVEP benchmark dataset for elderly population},
author = {Bingchuan Liu and Yijun Wang and Xiaorong Gao and Xiaogang Chen},
doi = {10.82901/nemar.nm000130},
url = {https://doi.org/10.82901/nemar.nm000130},
}
API Reference#
eegdash.datasetEEGDashDatasetNM000130 · Liu2022eegdash/dataset/registry.py · [source ↗]- class eegdash.dataset.NM000130(cache_dir: str, query: dict | None = None, s3_bucket: str | None = None, **kwargs)[source]#
Liu2022 – eldBETA SSVEP benchmark dataset for elderly population
- Study:
nm000130(NeMAR)- Author (year):
Liu2022- Canonical:
—
Also importable as:
NM000130,Liu2022.Modality:
eeg; Experiment type:Perception; Subject type:Healthy. Subjects: 100; recordings: 700; tasks: 1.- Parameters:
cache_dir (str | Path) – Directory where data are cached locally.
query (dict | None) – Additional MongoDB-style filters to AND with the dataset selection. Must not contain the key
dataset.s3_bucket (str | None) – Base S3 bucket used to locate the data.
**kwargs (dict) – Additional keyword arguments forwarded to
EEGDashDataset.
- data_dir#
Local dataset cache directory (
cache_dir / dataset_id).- Type:
Path
Notes
Each item is a recording; recording-level metadata are available via
dataset.description.querysupports MongoDB-style filters on fields inALLOWED_QUERY_FIELDSand is combined with the dataset filter. Dataset-specific caveats are not provided in the summary metadata.References
OpenNeuro dataset: https://openneuro.org/datasets/nm000130 NeMAR dataset: https://nemar.org/dataexplorer/detail?dataset_id=nm000130 DOI: https://doi.org/10.82901/nemar.nm000130
Examples
>>> from eegdash.dataset import NM000130 >>> dataset = NM000130(cache_dir="./data") >>> recording = dataset[0] >>> raw = recording.load()
- __init__(cache_dir: str, query: dict | None = None, s3_bucket: str | None = None, **kwargs)[source]#
- save(path: str, overwrite: bool = False, offset: int = 0)[source]#
Save datasets to files by creating one subdirectory for each dataset:
path/ 0/ 0-raw.fif | 0-epo.fif description.json raw_preproc_kwargs.json (if raws were preprocessed) window_kwargs.json (if this is a windowed dataset) window_preproc_kwargs.json (if windows were preprocessed) target_name.json (if target_name is not None and dataset is raw) 1/ 1-raw.fif | 1-epo.fif description.json raw_preproc_kwargs.json (if raws were preprocessed) window_kwargs.json (if this is a windowed dataset) window_preproc_kwargs.json (if windows were preprocessed) target_name.json (if target_name is not None and dataset is raw)
- Parameters:
path (str) –
- Directory in which subdirectories are created to store
-raw.fif | -epo.fif and .json files to.
overwrite (bool) – Whether to delete old subdirectories that will be saved to in this call.
offset (int) – If provided, the integer is added to the id of the dataset in the concat. This is useful in the setting of very large datasets, where one dataset has to be processed and saved at a time to account for its original position.
BaseDataset from braindecode — windowed via create_windows_from_events.braindecodeDataLoader; supports parallel workers and on-the-fly augmentations.pytorchSwap any load_dataset(...) call for nm000130 to reproduce the tutorial on this dataset.
Citation
Bingchuan Liu, Yijun Wang, Xiaorong Gao, Xiaogang Chen (2019). Liu2022 – eldBETA SSVEP benchmark dataset for elderly population. 10.82901/nemar.nm000130
Provenance
¹Contributed to nemar in BIDS format.
²Curated & ingested by the EEGDash catalog; see CITATION.cff for canonical reference.
³Persistent identifier: 10.82901/nemar.nm000130.
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See Also#
eegdash.dataset.EEGDashDataseteegdash.dataset