NM000205: eeg dataset, 14 subjects#
RSVP collaborative BCI dataset from Zheng et al 2020
Citation: Li Zheng, Sen Sun, Hongze Zhao, Weihua Pei, Hongda Chen, Xiaorong Gao, Lijian Zhang, Yijun Wang (2020). RSVP collaborative BCI dataset from Zheng et al 2020.
14-participant EEG dataset — RSVP collaborative BCI dataset from Zheng et al 2020.
Quickstart#
Install
pip install eegdash
Access the data
from eegdash.dataset import NM000205
dataset = NM000205(cache_dir="./data")
# Get the raw object of the first recording
raw = dataset.datasets[0].raw
print(raw.info)
Filter by subject
dataset = NM000205(cache_dir="./data", subject="01")
Advanced query
dataset = NM000205(
cache_dir="./data",
query={"subject": {"$in": ["01", "02"]}},
)
Iterate recordings
for rec in dataset:
print(rec.subject, rec.raw.info['sfreq'])
If you use this dataset in your research, please cite the original authors.
BibTeX
@dataset{nm000205,
title = {RSVP collaborative BCI dataset from Zheng et al 2020},
author = {Li Zheng and Sen Sun and Hongze Zhao and Weihua Pei and Hongda Chen and Xiaorong Gao and Lijian Zhang and Yijun Wang},
}
About This Dataset#
RSVP collaborative BCI dataset from Zheng et al 2020.
Schema: HED 8.4.0 | Browse: https://www.hedtags.org/hed-schema-browser
RSVP collaborative BCI dataset from Zheng et al 2020
Target
├─ Sensory-event
├─ Experimental-stimulus
View full README
RSVP collaborative BCI dataset from Zheng et al 2020
Target
├─ Sensory-event
├─ Experimental-stimulus
├─ Visual-presentation
└─ Target
NonTarget
├─ Sensory-event
├─ Experimental-stimulus
├─ Visual-presentation
└─ Non-target
Paradigm-Specific Parameters
Detected paradigm: p300
Stimulus onset asynchrony: 100.0 ms
Data Structure
Trials: {‘target’: 168, ‘nontarget’: 4032}
Trials context: per subject across both sessions
Signal Processing
Classifiers: HDCA
Feature extraction: SIM, CSP, TRCA, PCA
Frequency bands: bandpass=[2.0, 30.0] Hz
Spatial filters: SIM, CSP, PCA, CAR, TRCA
Cross-Validation
Method: holdout
Evaluation type: within_subject, cross_session
BCI Application
Applications: target_image_detection, collaborative_BCI
Environment: laboratory
Online feedback: True
Tags
Pathology: Healthy
Modality: ERP
Type: RSVP
Documentation
DOI: 10.3389/fnins.2020.579469
License: CC-BY-4.0
Investigators: Li Zheng, Sen Sun, Hongze Zhao, Weihua Pei, Hongda Chen, Xiaorong Gao, Lijian Zhang, Yijun Wang
Institution: Chinese Academy of Sciences
Country: CN
Publication year: 2020
References
Zheng, L., Sun, S., Zhao, H., et al. (2020). A Cross-Session Dataset for Collaborative Brain-Computer Interfaces Based on Rapid Serial Visual Presentation. Frontiers in Neuroscience, 14, 579469. https://doi.org/10.3389/fnins.2020.579469 Appelhoff, S., Sanderson, M., Brooks, T., Vliet, M., Quentin, R., Holdgraf, C., Chaumon, M., Mikulan, E., Tavabi, K., Hochenberger, R., Welke, D., Brunner, C., Rockhill, A., Larson, E., Gramfort, A. and Jas, M. (2019). MNE-BIDS: Organizing electrophysiological data into the BIDS format and facilitating their analysis. Journal of Open Source Software 4: (1896). https://doi.org/10.21105/joss.01896 Pernet, C. R., Appelhoff, S., Gorgolewski, K. J., Flandin, G., Phillips, C., Delorme, A., Oostenveld, R. (2019). EEG-BIDS, an extension to the brain imaging data structure for electroencephalography. Scientific Data, 6, 103. https://doi.org/10.1038/s41597-019-0104-8 Generated by MOABB 1.5.0 (Mother of All BCI Benchmarks) NeuroTechX/moabb
Cohort#
Dataset Statistics#
Age distribution by gender (n=14, range 25–25 yr, mean 24.0 yr)
Channel counts: 62 ch (n=84 recordings)
Sampling frequencies: 1000.0 Hz (n=84 recordings)
Total recording duration: 8 h 27 min
Signal · Electrodes & live trace#
Live trace viewer — sub-13 · ses-0 · task-p300 · run-0
Showing one representative recording out of
14 subjects and 84 recordings in this dataset.
Browse the full set on OpenNeuro;
drop any other _eeg.{set,edf,bdf,vhdr} file onto the
viewer (or pass ?eeg=<url>) to inspect it.
Electrode layout — EEG · 60 sensors — 60 channels
NEMAR Processing Statistics#
The plots below are generated by NEMAR’s automated EEG pipeline. The histogram shows pipeline success for data cleaning and ICA decomposition, the percentage of data frames and EEG channels retained after artefact removal, line noise per channel (RMS, dB), and the age/gender distribution of participants.
HED event descriptors word cloud
Manifest#
File Explorer#
Browse the BIDS file structure of this dataset. Records are fetched on demand from the EEGDash catalog the first time you open the explorer.
Full dataset metadata table
Dataset ID |
|
Title |
RSVP collaborative BCI dataset from Zheng et al 2020 |
Author (year) |
|
Canonical |
— |
Importable as |
|
Year |
2020 |
Authors |
Li Zheng, Sen Sun, Hongze Zhao, Weihua Pei, Hongda Chen, Xiaorong Gao, Lijian Zhang, Yijun Wang |
License |
CC-BY-4.0 |
Citation / DOI |
Unknown |
Source links |
OpenNeuro | NeMAR | Source URL |
API Reference#
eegdash.datasetEEGDashDatasetNM000205 · Zheng2020eegdash/dataset/registry.py · [source ↗]- class eegdash.dataset.NM000205(cache_dir: str, query: dict | None = None, s3_bucket: str | None = None, **kwargs)[source]#
RSVP collaborative BCI dataset from Zheng et al 2020
- Study:
nm000205(NeMAR)- Author (year):
Zheng2020- Canonical:
—
Also importable as:
NM000205,Zheng2020.Modality:
eeg; Experiment type:Attention; Subject type:Healthy. Subjects: 14; recordings: 84; tasks: 1.- Parameters:
cache_dir (str | Path) – Directory where data are cached locally.
query (dict | None) – Additional MongoDB-style filters to AND with the dataset selection. Must not contain the key
dataset.s3_bucket (str | None) – Base S3 bucket used to locate the data.
**kwargs (dict) – Additional keyword arguments forwarded to
EEGDashDataset.
- data_dir#
Local dataset cache directory (
cache_dir / dataset_id).- Type:
Path
Notes
Each item is a recording; recording-level metadata are available via
dataset.description.querysupports MongoDB-style filters on fields inALLOWED_QUERY_FIELDSand is combined with the dataset filter. Dataset-specific caveats are not provided in the summary metadata.References
OpenNeuro dataset: https://openneuro.org/datasets/nm000205 NeMAR dataset: https://nemar.org/dataexplorer/detail?dataset_id=nm000205
Examples
>>> from eegdash.dataset import NM000205 >>> dataset = NM000205(cache_dir="./data") >>> recording = dataset[0] >>> raw = recording.load()
- __init__(cache_dir: str, query: dict | None = None, s3_bucket: str | None = None, **kwargs)[source]#
- save(path: str, overwrite: bool = False, offset: int = 0)[source]#
Save datasets to files by creating one subdirectory for each dataset:
path/ 0/ 0-raw.fif | 0-epo.fif description.json raw_preproc_kwargs.json (if raws were preprocessed) window_kwargs.json (if this is a windowed dataset) window_preproc_kwargs.json (if windows were preprocessed) target_name.json (if target_name is not None and dataset is raw) 1/ 1-raw.fif | 1-epo.fif description.json raw_preproc_kwargs.json (if raws were preprocessed) window_kwargs.json (if this is a windowed dataset) window_preproc_kwargs.json (if windows were preprocessed) target_name.json (if target_name is not None and dataset is raw)
- Parameters:
path (str) –
- Directory in which subdirectories are created to store
-raw.fif | -epo.fif and .json files to.
overwrite (bool) – Whether to delete old subdirectories that will be saved to in this call.
offset (int) – If provided, the integer is added to the id of the dataset in the concat. This is useful in the setting of very large datasets, where one dataset has to be processed and saved at a time to account for its original position.
BaseDataset from braindecode — windowed via create_windows_from_events.braindecodeDataLoader; supports parallel workers and on-the-fly augmentations.pytorchSwap any load_dataset(...) call for nm000205 to reproduce the tutorial on this dataset.
Citation
Li Zheng, Sen Sun, Hongze Zhao, Weihua Pei, Hongda Chen, … (2020). RSVP collaborative BCI dataset from Zheng et al 2020.
Provenance
¹Contributed to nemar in BIDS format.
²Curated & ingested by the EEGDash catalog; see CITATION.cff for canonical reference.
See Also#
eegdash.dataset.EEGDashDataseteegdash.dataset