NM000122: eeg dataset, 12 subjects#
Chen2017 – Single-flicker online SSVEP BCI dataset
Citation: Jingjing Chen, Dan Zhang, Andreas K. Engel, Qin Gong, Alexander Maye (2019). Chen2017 – Single-flicker online SSVEP BCI dataset. 10.82901/nemar.nm000122
12-participant EEG dataset — Chen2017 – Single-flicker online SSVEP BCI dataset.
Quickstart#
Install
pip install eegdash
Access the data
from eegdash.dataset import NM000122
dataset = NM000122(cache_dir="./data")
# Get the raw object of the first recording
raw = dataset.datasets[0].raw
print(raw.info)
Filter by subject
dataset = NM000122(cache_dir="./data", subject="01")
Advanced query
dataset = NM000122(
cache_dir="./data",
query={"subject": {"$in": ["01", "02"]}},
)
Iterate recordings
for rec in dataset:
print(rec.subject, rec.raw.info['sfreq'])
If you use this dataset in your research, please cite the original authors.
BibTeX
@dataset{nm000122,
title = {Chen2017 – Single-flicker online SSVEP BCI dataset},
author = {Jingjing Chen and Dan Zhang and Andreas K. Engel and Qin Gong and Alexander Maye},
doi = {10.82901/nemar.nm000122},
url = {https://doi.org/10.82901/nemar.nm000122},
}
About This Dataset#
Single-flicker online SSVEP BCI dataset.
Schema: HED 8.4.0 | Browse: https://www.hedtags.org/hed-schema-browser
Single-flicker online SSVEP BCI dataset
north
View full README
Single-flicker online SSVEP BCI dataset
north
├─ Sensory-event
├─ Experimental-stimulus
├─ Visual-presentation
└─ Label/north
east
├─ Sensory-event
├─ Experimental-stimulus
├─ Visual-presentation
└─ Label/east
west
├─ Sensory-event
├─ Experimental-stimulus
├─ Visual-presentation
└─ Label/west
south
├─ Sensory-event
├─ Experimental-stimulus
├─ Visual-presentation
└─ Label/south
Paradigm-Specific Parameters
Detected paradigm: ssvep
Stimulus frequencies: [15.0] Hz
Signal Processing
Classifiers: LDA
Feature extraction: CCA
Frequency bands: bandpass=[1.0, 80.0] Hz
Spatial filters: CCA
Cross-Validation
Evaluation type: within_subject
BCI Application
Applications: spatial_navigation
Environment: lab
Online feedback: True
Tags
Pathology: healthy
Modality: visual
Type: perception
Documentation
DOI: 10.1371/journal.pone.0178385
License: CC BY 4.0
Investigators: Jingjing Chen, Dan Zhang, Andreas K. Engel, Qin Gong, Alexander Maye
Senior author: Alexander Maye
Institution: University Medical Center Hamburg-Eppendorf
Department: Department of Neurophysiology and Pathophysiology, University Medical Center Hamburg-Eppendorf
Country: DE
Repository: Zenodo
Data URL: https://zenodo.org/records/580485
Publication year: 2017
Funding: DFG TRR169/B1/Z2 Crossmodal Learning; Landesforschungsfoerderung Hamburg CROSS FV25
Ethics approval: Ethics committee of the medical association, Hamburg
Keywords: SSVEP, BCI, spatial navigation, single-flicker, online BCI
References
J. Chen, D. Zhang, A. K. Engel, Q. Gong, and A. Maye, “Application of a single-flicker online SSVEP BCI for spatial navigation,” PLoS ONE, vol. 12, no. 5, e0178385, 2017. DOI: 10.1371/journal.pone.0178385 Appelhoff, S., Sanderson, M., Brooks, T., Vliet, M., Quentin, R., Holdgraf, C., Chaumon, M., Mikulan, E., Tavabi, K., Hochenberger, R., Welke, D., Brunner, C., Rockhill, A., Larson, E., Gramfort, A. and Jas, M. (2019). MNE-BIDS: Organizing electrophysiological data into the BIDS format and facilitating their analysis. Journal of Open Source Software 4: (1896). https://doi.org/10.21105/joss.01896 Pernet, C. R., Appelhoff, S., Gorgolewski, K. J., Flandin, G., Phillips, C., Delorme, A., Oostenveld, R. (2019). EEG-BIDS, an extension to the brain imaging data structure for electroencephalography. Scientific Data, 6, 103. https://doi.org/10.1038/s41597-019-0104-8 Generated by MOABB 1.4.3 (Mother of All BCI Benchmarks) NeuroTechX/moabb
Cohort#
Dataset Statistics#
Age distribution by gender (n=12, range 24–24 yr, mean 23.0 yr)
Channel counts: 32 ch (n=12 recordings)
Sampling frequencies: 512.0 Hz (n=12 recordings)
Total recording duration: 3 h 16 min
Signal · Electrodes & live trace#
Live trace viewer — sub-12 · ses-1 · task-ssvep · run-0
Showing one representative recording out of
12 subjects and 12 recordings in this dataset.
Browse the full set on OpenNeuro;
drop any other _eeg.{set,edf,bdf,vhdr} file onto the
viewer (or pass ?eeg=<url>) to inspect it.
Electrode layout — EEG · 32 sensors — 32 channels
NEMAR Processing Statistics#
The plots below are generated by NEMAR’s automated EEG pipeline. The histogram shows pipeline success for data cleaning and ICA decomposition, the percentage of data frames and EEG channels retained after artefact removal, line noise per channel (RMS, dB), and the age/gender distribution of participants.
HED event descriptors word cloud
Manifest#
File Explorer#
Browse the BIDS file structure of this dataset. Records are fetched on demand from the EEGDash catalog the first time you open the explorer.
Full dataset metadata table
Dataset ID |
|
Title |
Chen2017 – Single-flicker online SSVEP BCI dataset |
Author (year) |
|
Canonical |
— |
Importable as |
|
Year |
2019 |
Authors |
Jingjing Chen, Dan Zhang, Andreas K. Engel, Qin Gong, Alexander Maye |
License |
CC BY 4.0 |
Citation / DOI |
|
Source links |
OpenNeuro | NeMAR | Source URL |
Copy-paste BibTeX
@dataset{nm000122,
title = {Chen2017 – Single-flicker online SSVEP BCI dataset},
author = {Jingjing Chen and Dan Zhang and Andreas K. Engel and Qin Gong and Alexander Maye},
doi = {10.82901/nemar.nm000122},
url = {https://doi.org/10.82901/nemar.nm000122},
}
API Reference#
eegdash.datasetEEGDashDatasetNM000122 · Chen2017eegdash/dataset/registry.py · [source ↗]- class eegdash.dataset.NM000122(cache_dir: str, query: dict | None = None, s3_bucket: str | None = None, **kwargs)[source]#
Chen2017 – Single-flicker online SSVEP BCI dataset
- Study:
nm000122(NeMAR)- Author (year):
Chen2017- Canonical:
—
Also importable as:
NM000122,Chen2017.Modality:
eeg; Experiment type:Perception; Subject type:Healthy. Subjects: 12; recordings: 12; tasks: 1.- Parameters:
cache_dir (str | Path) – Directory where data are cached locally.
query (dict | None) – Additional MongoDB-style filters to AND with the dataset selection. Must not contain the key
dataset.s3_bucket (str | None) – Base S3 bucket used to locate the data.
**kwargs (dict) – Additional keyword arguments forwarded to
EEGDashDataset.
- data_dir#
Local dataset cache directory (
cache_dir / dataset_id).- Type:
Path
Notes
Each item is a recording; recording-level metadata are available via
dataset.description.querysupports MongoDB-style filters on fields inALLOWED_QUERY_FIELDSand is combined with the dataset filter. Dataset-specific caveats are not provided in the summary metadata.References
OpenNeuro dataset: https://openneuro.org/datasets/nm000122 NeMAR dataset: https://nemar.org/dataexplorer/detail?dataset_id=nm000122 DOI: https://doi.org/10.82901/nemar.nm000122
Examples
>>> from eegdash.dataset import NM000122 >>> dataset = NM000122(cache_dir="./data") >>> recording = dataset[0] >>> raw = recording.load()
- __init__(cache_dir: str, query: dict | None = None, s3_bucket: str | None = None, **kwargs)[source]#
- save(path: str, overwrite: bool = False, offset: int = 0)[source]#
Save datasets to files by creating one subdirectory for each dataset:
path/ 0/ 0-raw.fif | 0-epo.fif description.json raw_preproc_kwargs.json (if raws were preprocessed) window_kwargs.json (if this is a windowed dataset) window_preproc_kwargs.json (if windows were preprocessed) target_name.json (if target_name is not None and dataset is raw) 1/ 1-raw.fif | 1-epo.fif description.json raw_preproc_kwargs.json (if raws were preprocessed) window_kwargs.json (if this is a windowed dataset) window_preproc_kwargs.json (if windows were preprocessed) target_name.json (if target_name is not None and dataset is raw)
- Parameters:
path (str) –
- Directory in which subdirectories are created to store
-raw.fif | -epo.fif and .json files to.
overwrite (bool) – Whether to delete old subdirectories that will be saved to in this call.
offset (int) – If provided, the integer is added to the id of the dataset in the concat. This is useful in the setting of very large datasets, where one dataset has to be processed and saved at a time to account for its original position.
BaseDataset from braindecode — windowed via create_windows_from_events.braindecodeDataLoader; supports parallel workers and on-the-fly augmentations.pytorchSwap any load_dataset(...) call for nm000122 to reproduce the tutorial on this dataset.
Citation
Jingjing Chen, Dan Zhang, Andreas K. Engel, Qin Gong, Alexander Maye (2019). Chen2017 – Single-flicker online SSVEP BCI dataset. 10.82901/nemar.nm000122
Provenance
¹Contributed to nemar in BIDS format.
²Curated & ingested by the EEGDash catalog; see CITATION.cff for canonical reference.
³Persistent identifier: 10.82901/nemar.nm000122.
See Also#
eegdash.dataset.EEGDashDataseteegdash.dataset