NM000210: eeg dataset, 15 subjects#
BCIAUT-P300 dataset for autism from Simoes et al 2020
Citation: Marco Simoes, Davide Borra, Eduardo Santamaria-Vazquez, Mayra Bittencourt-Villalpando, Dominik Krzeminski, Aleksandar Miladinovic, Carlos Amaral, Bruno Direito, Miguel Castelo-Branco (2020). BCIAUT-P300 dataset for autism from Simoes et al 2020.
15-participant EEG dataset — BCIAUT-P300 dataset for autism from Simoes et al 2020.
Quickstart#
Install
pip install eegdash
Access the data
from eegdash.dataset import NM000210
dataset = NM000210(cache_dir="./data")
# Get the raw object of the first recording
raw = dataset.datasets[0].raw
print(raw.info)
Filter by subject
dataset = NM000210(cache_dir="./data", subject="01")
Advanced query
dataset = NM000210(
cache_dir="./data",
query={"subject": {"$in": ["01", "02"]}},
)
Iterate recordings
for rec in dataset:
print(rec.subject, rec.raw.info['sfreq'])
If you use this dataset in your research, please cite the original authors.
BibTeX
@dataset{nm000210,
title = {BCIAUT-P300 dataset for autism from Simoes et al 2020},
author = {Marco Simoes and Davide Borra and Eduardo Santamaria-Vazquez and Mayra Bittencourt-Villalpando and Dominik Krzeminski and Aleksandar Miladinovic and Carlos Amaral and Bruno Direito and Miguel Castelo-Branco},
}
About This Dataset#
BCIAUT-P300 dataset for autism from Simoes et al 2020.
Schema: HED 8.4.0 | Browse: https://www.hedtags.org/hed-schema-browser
BCIAUT-P300 dataset for autism from Simoes et al 2020
Target
├─ Sensory-event
├─ Experimental-stimulus
View full README
BCIAUT-P300 dataset for autism from Simoes et al 2020
Target
├─ Sensory-event
├─ Experimental-stimulus
├─ Visual-presentation
└─ Target
NonTarget
├─ Sensory-event
├─ Experimental-stimulus
├─ Visual-presentation
└─ Non-target
Paradigm-Specific Parameters
Detected paradigm: p300
Data Structure
**Trials**: 1600 train + 400*K test per session (K=3-10)
Trials context: per_session
Signal Processing
Classifiers: EEGNet, LDA, SVM, MLP
Feature extraction: temporal_features, deep_learning
Frequency bands: bandpass=[2.0, 30.0] Hz
Cross-Validation
Method: calibration_vs_online
Evaluation type: within_subject, cross_session, cross_subject
BCI Application
Applications: joint_attention_training
Environment: clinical
Online feedback: True
Tags
Pathology: Autism
Modality: ERP
Type: P300
Documentation
DOI: 10.3389/fnins.2020.568104
License: CC-BY-4.0
Investigators: Marco Simoes, Davide Borra, Eduardo Santamaria-Vazquez, Mayra Bittencourt-Villalpando, Dominik Krzeminski, Aleksandar Miladinovic, Carlos Amaral, Bruno Direito, Miguel Castelo-Branco
Institution: University of Coimbra
Country: PT
Data URL: https://zenodo.org/records/19005186
Publication year: 2020
References
Simoes, M., Borra, D., Santamaria-Vazquez, E., et al. (2020). BCIAUT-P300: A Multi-Session and Multi-Subject Benchmark Dataset on Autism for P300-Based Brain-Computer- Interfaces. Frontiers in Neuroscience, 14, 568104. https://doi.org/10.3389/fnins.2020.568104 Appelhoff, S., Sanderson, M., Brooks, T., Vliet, M., Quentin, R., Holdgraf, C., Chaumon, M., Mikulan, E., Tavabi, K., Hochenberger, R., Welke, D., Brunner, C., Rockhill, A., Larson, E., Gramfort, A. and Jas, M. (2019). MNE-BIDS: Organizing electrophysiological data into the BIDS format and facilitating their analysis. Journal of Open Source Software 4: (1896). https://doi.org/10.21105/joss.01896 Pernet, C. R., Appelhoff, S., Gorgolewski, K. J., Flandin, G., Phillips, C., Delorme, A., Oostenveld, R. (2019). EEG-BIDS, an extension to the brain imaging data structure for electroencephalography. Scientific Data, 6, 103. https://doi.org/10.1038/s41597-019-0104-8 Generated by MOABB 1.5.0 (Mother of All BCI Benchmarks) NeuroTechX/moabb
Cohort#
Dataset Statistics#
Age distribution by gender (n=15, range 22–22 yr, mean 22.0 yr)
Sex composition
Channel counts: 8 ch (n=210 recordings)
Sampling frequencies: 250.0 Hz (n=210 recordings)
Total recording duration: 187 h
Signal · Electrodes & live trace#
Live trace viewer — sub-13 · ses-4 · task-p300 · run-1
Showing one representative recording out of
15 subjects and 210 recordings in this dataset.
Browse the full set on OpenNeuro;
drop any other _eeg.{set,edf,bdf,vhdr} file onto the
viewer (or pass ?eeg=<url>) to inspect it.
Electrode layout — EEG · 8 sensors — 8 channels
NEMAR Processing Statistics#
The plots below are generated by NEMAR’s automated EEG pipeline. The histogram shows pipeline success for data cleaning and ICA decomposition, the percentage of data frames and EEG channels retained after artefact removal, line noise per channel (RMS, dB), and the age/gender distribution of participants.
HED event descriptors word cloud
Manifest#
File Explorer#
Browse the BIDS file structure of this dataset. Records are fetched on demand from the EEGDash catalog the first time you open the explorer.
Full dataset metadata table
Dataset ID |
|
Title |
BCIAUT-P300 dataset for autism from Simoes et al 2020 |
Author (year) |
|
Canonical |
— |
Importable as |
|
Year |
2020 |
Authors |
Marco Simoes, Davide Borra, Eduardo Santamaria-Vazquez, Mayra Bittencourt-Villalpando, Dominik Krzeminski, Aleksandar Miladinovic, Carlos Amaral, Bruno Direito, Miguel Castelo-Branco |
License |
CC-BY-4.0 |
Citation / DOI |
Unknown |
Source links |
OpenNeuro | NeMAR | Source URL |
API Reference#
eegdash.datasetEEGDashDatasetNM000210 · Simoes2020eegdash/dataset/registry.py · [source ↗]- class eegdash.dataset.NM000210(cache_dir: str, query: dict | None = None, s3_bucket: str | None = None, **kwargs)[source]#
BCIAUT-P300 dataset for autism from Simoes et al 2020
- Study:
nm000210(NeMAR)- Author (year):
Simoes2020- Canonical:
—
Also importable as:
NM000210,Simoes2020.Modality:
eeg; Experiment type:Clinical/Intervention; Subject type:Development. Subjects: 15; recordings: 210; tasks: 1.- Parameters:
cache_dir (str | Path) – Directory where data are cached locally.
query (dict | None) – Additional MongoDB-style filters to AND with the dataset selection. Must not contain the key
dataset.s3_bucket (str | None) – Base S3 bucket used to locate the data.
**kwargs (dict) – Additional keyword arguments forwarded to
EEGDashDataset.
- data_dir#
Local dataset cache directory (
cache_dir / dataset_id).- Type:
Path
Notes
Each item is a recording; recording-level metadata are available via
dataset.description.querysupports MongoDB-style filters on fields inALLOWED_QUERY_FIELDSand is combined with the dataset filter. Dataset-specific caveats are not provided in the summary metadata.References
OpenNeuro dataset: https://openneuro.org/datasets/nm000210 NeMAR dataset: https://nemar.org/dataexplorer/detail?dataset_id=nm000210
Examples
>>> from eegdash.dataset import NM000210 >>> dataset = NM000210(cache_dir="./data") >>> recording = dataset[0] >>> raw = recording.load()
- __init__(cache_dir: str, query: dict | None = None, s3_bucket: str | None = None, **kwargs)[source]#
- save(path: str, overwrite: bool = False, offset: int = 0)[source]#
Save datasets to files by creating one subdirectory for each dataset:
path/ 0/ 0-raw.fif | 0-epo.fif description.json raw_preproc_kwargs.json (if raws were preprocessed) window_kwargs.json (if this is a windowed dataset) window_preproc_kwargs.json (if windows were preprocessed) target_name.json (if target_name is not None and dataset is raw) 1/ 1-raw.fif | 1-epo.fif description.json raw_preproc_kwargs.json (if raws were preprocessed) window_kwargs.json (if this is a windowed dataset) window_preproc_kwargs.json (if windows were preprocessed) target_name.json (if target_name is not None and dataset is raw)
- Parameters:
path (str) –
- Directory in which subdirectories are created to store
-raw.fif | -epo.fif and .json files to.
overwrite (bool) – Whether to delete old subdirectories that will be saved to in this call.
offset (int) – If provided, the integer is added to the id of the dataset in the concat. This is useful in the setting of very large datasets, where one dataset has to be processed and saved at a time to account for its original position.
BaseDataset from braindecode — windowed via create_windows_from_events.braindecodeDataLoader; supports parallel workers and on-the-fly augmentations.pytorchSwap any load_dataset(...) call for nm000210 to reproduce the tutorial on this dataset.
Citation
Marco Simoes, Davide Borra, Eduardo Santamaria-Vazquez, Mayra Bittencourt-Villalpando, Dominik Krzeminski, … (2020). BCIAUT-P300 dataset for autism from Simoes et al 2020.
Provenance
¹Contributed to nemar in BIDS format.
²Curated & ingested by the EEGDash catalog; see CITATION.cff for canonical reference.
Related & sibling datasets
+ 1 more — see See Also below →
See Also#
eegdash.dataset.EEGDashDataseteegdash.dataset