NM000144: eeg dataset, 9 subjects#
BNCI 2015-004 Mental tasks dataset
Citation: Reinhold Scherer, Josef Faller, Elisabeth V. C. Friedrich, Eloy Opisso, Ursula Costa, Andrea Kübler, Gernot R. Müller-Putz (2017). BNCI 2015-004 Mental tasks dataset. 10.82901/nemar.nm000144
9-participant EEG dataset — BNCI 2015-004 Mental tasks dataset.
Quickstart#
Install
pip install eegdash
Access the data
from eegdash.dataset import NM000144
dataset = NM000144(cache_dir="./data")
# Get the raw object of the first recording
raw = dataset.datasets[0].raw
print(raw.info)
Filter by subject
dataset = NM000144(cache_dir="./data", subject="01")
Advanced query
dataset = NM000144(
cache_dir="./data",
query={"subject": {"$in": ["01", "02"]}},
)
Iterate recordings
for rec in dataset:
print(rec.subject, rec.raw.info['sfreq'])
If you use this dataset in your research, please cite the original authors.
BibTeX
@dataset{nm000144,
title = {BNCI 2015-004 Mental tasks dataset},
author = {Reinhold Scherer and Josef Faller and Elisabeth V. C. Friedrich and Eloy Opisso and Ursula Costa and Andrea Kübler and Gernot R. Müller-Putz},
doi = {10.82901/nemar.nm000144},
url = {https://doi.org/10.82901/nemar.nm000144},
}
About This Dataset#
BNCI 2015-004 Mental tasks dataset.
Schema: HED 8.4.0 | Browse: https://www.hedtags.org/hed-schema-browser
BNCI 2015-004 Mental tasks dataset
math
View full README
BNCI 2015-004 Mental tasks dataset
math
├─ Sensory-event, Experimental-stimulus, Visual-presentation
└─ Agent-action
└─ Imagine
├─ Think
└─ Label/math
letter
├─ Sensory-event, Experimental-stimulus, Visual-presentation
└─ Agent-action
└─ Imagine
├─ Think
└─ Label/letter
rotation
├─ Sensory-event, Experimental-stimulus, Visual-presentation
└─ Agent-action
└─ Imagine
├─ Think
└─ Label/rotation
count
├─ Sensory-event, Experimental-stimulus, Visual-presentation
└─ Agent-action
└─ Imagine, Count
baseline
├─ Sensory-event
├─ Experimental-stimulus
├─ Visual-presentation
└─ Rest
Paradigm-Specific Parameters
Detected paradigm: motor_imagery
Imagery tasks: right_hand, feet, word_association, mental_subtraction, spatial_navigation
Cue duration: 1.0 s
Imagery duration: 7.0 s
Data Structure
Trials: 40
Blocks per session: 8
Trials context: per_class_per_day
Preprocessing
Data state: filtered
Preprocessing applied: True
Steps: bandpass filter, notch filter, artifact rejection
Highpass filter: 0.5 Hz
Lowpass filter: 100.0 Hz
Bandpass filter: {‘low_cutoff_hz’: 0.5, ‘high_cutoff_hz’: 100.0}
Notch filter: [50] Hz
Artifact methods: manual artifact rejection based on EOG
Re-reference: left and right mastoid
Signal Processing
Classifiers: LDA
Feature extraction: bandpower, temporal features
Frequency bands: mu=[8, 12] Hz; beta=[13, 30] Hz
Cross-Validation
Method: 10-fold cross-validation
Folds: 10
Evaluation type: within_session, cross_session
Performance (Original Study)
Accuracy: 77.0%
Best Task Pair Gmac: 77.0
Sub Vs Feet Gmac: 77.0
Word Vs Hand Gmac: 70.0
Hand Vs Feet Gmac: 64.0
Between Day Word Vs Hand Gmac: 82.0
BCI Application
Applications: communication, motor_function_restoration
Environment: rehabilitation center
Online feedback: False
Tags
Pathology: Stroke, Spinal Cord Injury, CNS Damage
Modality: Motor, Cognitive
Type: Motor, Cognitive
Documentation
DOI: 10.1371/journal.pone.0123727
License: CC-BY-NC-ND-4.0
Investigators: Reinhold Scherer, Josef Faller, Elisabeth V. C. Friedrich, Eloy Opisso, Ursula Costa, Andrea Kübler, Gernot R. Müller-Putz
Senior author: Reinhold Scherer
Contact: reinhold.scherer@tugraz.at
Institution: Institut Guttmann
Department: Institut Universitari de Neurorehabilitació adscrit a la UAB
Address: 08916 Badalona, Barcelona, Spain
Country: Spain
Repository: BNCI Horizon 2020
Publication year: 2015
Funding: FP7 EU Research Projects BrainAble (No. 247447); ABC (No. 287774); BackHome (No. 288566)
Ethics approval: Comitè d’Ètica Assistencial de l’Institut Guttman
Keywords: brain-computer interface, motor imagery, mental tasks, EEG, CNS tissue damage, stroke, spinal cord injury, binary classification
References
Zhang, X., Yao, L., Zhang, Q., Kanhere, S., Sheng, M., & Liu, Y. (2017). A survey on deep learning based brain computer interface: Recent advances and new frontiers. IEEE Transactions on Cognitive and Developmental Systems, 10(2), 145-163.
Notes
.. note::
BNCI2015_004 was previously named BNCI2015004. BNCI2015004 will be removed in version 1.1.
.. versionadded:: 0.4.0
Appelhoff, S., Sanderson, M., Brooks, T., Vliet, M., Quentin, R., Holdgraf, C., Chaumon, M., Mikulan, E., Tavabi, K., Hochenberger, R., Welke, D., Brunner, C., Rockhill, A., Larson, E., Gramfort, A. and Jas, M. (2019). MNE-BIDS: Organizing electrophysiological data into the BIDS format and facilitating their analysis. Journal of Open Source Software 4: (1896). https://doi.org/10.21105/joss.01896
Pernet, C. R., Appelhoff, S., Gorgolewski, K. J., Flandin, G., Phillips, C., Delorme, A., Oostenveld, R. (2019). EEG-BIDS, an extension to the brain imaging data structure for electroencephalography. Scientific Data, 6, 103. https://doi.org/10.1038/s41597-019-0104-8
Generated by MOABB 1.5.0 (Mother of All BCI Benchmarks)
NeuroTechX/moabb
Cohort#
Dataset Statistics#
Age distribution by gender (n=9, range 38–38 yr, mean 38.0 yr)
Channel counts: 30 ch (n=18 recordings)
Sampling frequencies: 256.0 Hz (n=18 recordings)
Total recording duration: 13 h 45 min
Signal · Electrodes & live trace#
Live trace viewer — sub-6 · ses-0 · task-imagery · run-0
Showing one representative recording out of
9 subjects and 18 recordings in this dataset.
Browse the full set on OpenNeuro;
drop any other _eeg.{set,edf,bdf,vhdr} file onto the
viewer (or pass ?eeg=<url>) to inspect it.
Electrode layout — EEG · 30 sensors — 30 channels
NEMAR Processing Statistics#
The plots below are generated by NEMAR’s automated EEG pipeline. The histogram shows pipeline success for data cleaning and ICA decomposition, the percentage of data frames and EEG channels retained after artefact removal, line noise per channel (RMS, dB), and the age/gender distribution of participants.
HED event descriptors word cloud
Manifest#
File Explorer#
Browse the BIDS file structure of this dataset. Records are fetched on demand from the EEGDash catalog the first time you open the explorer.
Full dataset metadata table
Dataset ID |
|
Title |
BNCI 2015-004 Mental tasks dataset |
Author (year) |
|
Canonical |
— |
Importable as |
|
Year |
2017 |
Authors |
Reinhold Scherer, Josef Faller, Elisabeth V. C. Friedrich, Eloy Opisso, Ursula Costa, Andrea Kübler, Gernot R. Müller-Putz |
License |
CC-BY-NC-ND-4.0 |
Citation / DOI |
|
Source links |
OpenNeuro | NeMAR | Source URL |
Copy-paste BibTeX
@dataset{nm000144,
title = {BNCI 2015-004 Mental tasks dataset},
author = {Reinhold Scherer and Josef Faller and Elisabeth V. C. Friedrich and Eloy Opisso and Ursula Costa and Andrea Kübler and Gernot R. Müller-Putz},
doi = {10.82901/nemar.nm000144},
url = {https://doi.org/10.82901/nemar.nm000144},
}
API Reference#
eegdash.datasetEEGDashDatasetNM000144 · Scherer2015eegdash/dataset/registry.py · [source ↗]- class eegdash.dataset.NM000144(cache_dir: str, query: dict | None = None, s3_bucket: str | None = None, **kwargs)[source]#
BNCI 2015-004 Mental tasks dataset
- Study:
nm000144(NeMAR)- Author (year):
Scherer2015- Canonical:
—
Also importable as:
NM000144,Scherer2015.Modality:
eeg; Experiment type:Motor; Subject type:Other. Subjects: 9; recordings: 18; tasks: 1.- Parameters:
cache_dir (str | Path) – Directory where data are cached locally.
query (dict | None) – Additional MongoDB-style filters to AND with the dataset selection. Must not contain the key
dataset.s3_bucket (str | None) – Base S3 bucket used to locate the data.
**kwargs (dict) – Additional keyword arguments forwarded to
EEGDashDataset.
- data_dir#
Local dataset cache directory (
cache_dir / dataset_id).- Type:
Path
Notes
Each item is a recording; recording-level metadata are available via
dataset.description.querysupports MongoDB-style filters on fields inALLOWED_QUERY_FIELDSand is combined with the dataset filter. Dataset-specific caveats are not provided in the summary metadata.References
OpenNeuro dataset: https://openneuro.org/datasets/nm000144 NeMAR dataset: https://nemar.org/dataexplorer/detail?dataset_id=nm000144 DOI: https://doi.org/10.82901/nemar.nm000144
Examples
>>> from eegdash.dataset import NM000144 >>> dataset = NM000144(cache_dir="./data") >>> recording = dataset[0] >>> raw = recording.load()
- __init__(cache_dir: str, query: dict | None = None, s3_bucket: str | None = None, **kwargs)[source]#
- save(path: str, overwrite: bool = False, offset: int = 0)[source]#
Save datasets to files by creating one subdirectory for each dataset:
path/ 0/ 0-raw.fif | 0-epo.fif description.json raw_preproc_kwargs.json (if raws were preprocessed) window_kwargs.json (if this is a windowed dataset) window_preproc_kwargs.json (if windows were preprocessed) target_name.json (if target_name is not None and dataset is raw) 1/ 1-raw.fif | 1-epo.fif description.json raw_preproc_kwargs.json (if raws were preprocessed) window_kwargs.json (if this is a windowed dataset) window_preproc_kwargs.json (if windows were preprocessed) target_name.json (if target_name is not None and dataset is raw)
- Parameters:
path (str) –
- Directory in which subdirectories are created to store
-raw.fif | -epo.fif and .json files to.
overwrite (bool) – Whether to delete old subdirectories that will be saved to in this call.
offset (int) – If provided, the integer is added to the id of the dataset in the concat. This is useful in the setting of very large datasets, where one dataset has to be processed and saved at a time to account for its original position.
BaseDataset from braindecode — windowed via create_windows_from_events.braindecodeDataLoader; supports parallel workers and on-the-fly augmentations.pytorchSwap any load_dataset(...) call for nm000144 to reproduce the tutorial on this dataset.
Citation
Reinhold Scherer, Josef Faller, Elisabeth V. C. Friedrich, Eloy Opisso, Ursula Costa, … (2017). BNCI 2015-004 Mental tasks dataset. 10.82901/nemar.nm000144
Provenance
¹Contributed to nemar in BIDS format.
²Curated & ingested by the EEGDash catalog; see CITATION.cff for canonical reference.
³Persistent identifier: 10.82901/nemar.nm000144.
See Also#
eegdash.dataset.EEGDashDataseteegdash.dataset